Regulation of the Structurally Dynamic N-terminal Domain of Progesterone Receptor by Protein-induced Folding*

Background: The mechanism of action of the N-terminal domain (NTD) of the progesterone receptor is not well understood. Results: We show the PR NTD adopts a functional folded conformation by undergoing disorder-order transition via binding to a target protein, TBP. Conclusion: This structural reorganization of the NTD facilitates binding of co-activators required for transcriptional activation. Significance: A novel mechanism of PR-dependent transcriptional activation is defined. The N-terminal domain (NTD) of steroid receptors harbors a transcriptional activation function (AF1) that is composed of an intrinsically disordered polypeptide. We examined the interaction of the TATA-binding protein (TBP) with the NTD of the progesterone receptor (PR) and its ability to regulate AF1 activity through coupled folding and binding. As assessed by solution phase biophysical methods, the isolated NTD of PR contains a large content of random coil, and it is capable of adopting secondary α-helical structure and more stable tertiary folding either in the presence of the natural osmolyte trimethylamine-N-oxide or through a direct interaction with TBP. Hydrogen-deuterium exchange coupled with mass spectrometry confirmed the highly dynamic intrinsically disordered property of the NTD within the context of full-length PR. Deletion mapping and point mutagenesis defined a region of the NTD (amino acids 350–428) required for structural folding in response to TBP interaction. Overexpression of TBP in cells enhanced transcriptional activity mediated by the PR NTD, and deletion mutations showed that a region (amino acids 327–428), similar to that required for TBP-induced folding, was required for functional response. TBP also increased steroid receptor co-activator 1 (SRC-1) interaction with the PR NTD and cooperated with SRC-1 to stimulate NTD-dependent transcriptional activity. These data suggest that TBP can mediate structural reorganization of the NTD to facilitate the binding of co-activators required for maximal transcriptional activation.

[1]  M. J. Chalmers,et al.  Time Window Expansion for HDX Analysis of an Intrinsically Disordered Protein , 2013, Journal of The American Society for Mass Spectrometry.

[2]  D. Moras,et al.  Allosteric controls of nuclear receptor function in the regulation of transcription. , 2013, Journal of molecular biology.

[3]  M. J. Chalmers,et al.  Protein conformation ensembles monitored by HDX reveal a structural rationale for abscisic acid signaling protein affinities and activities. , 2013, Structure.

[4]  P. Griffin,et al.  Binding of the N-terminal Region of Coactivator TIF2 to the Intrinsically Disordered AF1 Domain of the Glucocorticoid Receptor Is Accompanied by Conformational Reorganizations* , 2012, The Journal of Biological Chemistry.

[5]  Raj Kumar,et al.  Allosteric modulators of steroid hormone receptors: structural dynamics and gene regulation. , 2012, Endocrine reviews.

[6]  P. Tompa,et al.  Intrinsic disorder in cell signaling and gene transcription , 2012, Molecular and Cellular Endocrinology.

[7]  I. McEwan Nuclear hormone receptors: Allosteric switches , 2012, Molecular and Cellular Endocrinology.

[8]  D. Edwards,et al.  Structural and functional analysis of domains of the progesterone receptor , 2012, Molecular and Cellular Endocrinology.

[9]  R. Kumar,et al.  Folding of the glucocorticoid receptor N-terminal transactivation function: Dynamics and regulation , 2012, Molecular and Cellular Endocrinology.

[10]  B. O’Malley,et al.  Steroid receptor coactivators 1, 2, and 3: Critical regulators of nuclear receptor activity and steroid receptor modulator (SRM)-based cancer therapy , 2012, Molecular and Cellular Endocrinology.

[11]  D. Edwards,et al.  Binding-Folding Induced Regulation of AF1 Transactivation Domain of the Glucocorticoid Receptor by a Cofactor That Binds to Its DNA Binding Domain , 2011, PloS one.

[12]  V. Hilser,et al.  Structural Dynamics, Intrinsic Disorder, and Allostery in Nuclear Receptors as Transcription Factors* , 2011, The Journal of Biological Chemistry.

[13]  Raj Kumar,et al.  TBP Binding-Induced Folding of the Glucocorticoid Receptor AF1 Domain Facilitates Its Interaction with Steroid Receptor Coactivator-1 , 2011, PloS one.

[14]  Jörg Gsponer,et al.  Intrinsically disordered proteins: regulation and disease. , 2011, Current opinion in structural biology.

[15]  Raj Kumar,et al.  Naturally Occurring Osmolyte, Trehalose Induces Functional Conformation in an Intrinsically Disordered Activation Domain of Glucocorticoid Receptor , 2011, PloS one.

[16]  Jun Zhang,et al.  DNA binding alters coactivator interaction surfaces of the intact VDR–RXR complex , 2011, Nature Structural &Molecular Biology.

[17]  N. C. Price,et al.  Conformation of the mineralocorticoid receptor N-terminal domain: evidence for induced and stable structure. , 2010, Molecular endocrinology.

[18]  D. Edwards,et al.  Partial agonist activity of the progesterone receptor antagonist RU486 mediated by an amino-terminal domain coactivator and phosphorylation of serine400. , 2010, Molecular endocrinology.

[19]  Raj Kumar,et al.  Site-Specific Phosphorylation Induces Functionally Active Conformation in the Intrinsically Disordered N-Terminal Activation Function (AF1) Domain of the Glucocorticoid Receptor , 2009, Molecular and Cellular Biology.

[20]  D. Edwards,et al.  A Progesterone Receptor Co-activator (JDP2) Mediates Activity through Interaction with Residues in the Carboxyl-terminal Extension of the DNA Binding Domain♦ , 2009, The Journal of Biological Chemistry.

[21]  K. Horwitz,et al.  Mechanisms Underlying the Control of Progesterone Receptor Transcriptional Activity by SUMOylation* , 2009, Journal of Biological Chemistry.

[22]  H. Dyson,et al.  Linking folding and binding. , 2009, Current opinion in structural biology.

[23]  Yoshitomo Hamuro,et al.  Structure of the intact PPAR-γ–RXR-α nuclear receptor complex on DNA , 2008, Nature.

[24]  Sean Ekins,et al.  Intrinsic disorder in nuclear hormone receptors. , 2008, Journal of proteome research.

[25]  A Keith Dunker,et al.  Signal transduction via unstructured protein conduits. , 2008, Nature chemical biology.

[26]  C. Perez-Iratxeta,et al.  K2D2: Estimation of protein secondary structure from circular dichroism spectra , 2008, BMC Structural Biology.

[27]  R. Lanz,et al.  Nuclear receptor coregulators and human disease. , 2008, Endocrine reviews.

[28]  Qi Wang,et al.  Amino-terminal domain of TIF2 is involved in competing for corepressor binding to glucocorticoid and progesterone receptors. , 2007, Biochemistry.

[29]  Christopher J. Oldfield,et al.  Intrinsic disorder and functional proteomics. , 2007, Biophysical journal.

[30]  I. McEwan,et al.  Natural disordered sequences in the amino terminal domain of nuclear receptors: lessons from the androgen and glucocorticoid receptors , 2007, Nuclear receptor signaling.

[31]  Scott A. Busby,et al.  Improving digestion efficiency under H/D exchange conditions with activated pepsinogen coupled columns , 2007 .

[32]  D. Edwards,et al.  Structure of the progesterone receptor-deoxyribonucleic acid complex: novel interactions required for binding to half-site response elements. , 2006, Molecular endocrinology.

[33]  K. Horwitz,et al.  Progesterone receptors (PR)-B and -A regulate transcription by different mechanisms: AF-3 exerts regulatory control over coactivator binding to PR-B. , 2006, Molecular endocrinology.

[34]  Christopher J. Oldfield,et al.  Intrinsic disorder in transcription factors. , 2006, Biochemistry.

[35]  Raj Kumar,et al.  Activation function 1 of glucocorticoid receptor binds TATA-binding protein in vitro and in vivo. , 2006, Molecular endocrinology.

[36]  Scott A. Busby,et al.  Probing protein ligand interactions by automated hydrogen/deuterium exchange mass spectrometry. , 2006, Analytical chemistry.

[37]  D. Edwards,et al.  Regulation of the Amino-Terminal Transcription Activation Domain of Progesterone Receptor by a Cofactor-Induced Protein Folding Mechanism , 2005, Molecular and Cellular Biology.

[38]  H. Xu,et al.  Structural and biochemical mechanisms for the specificity of hormone binding and coactivator assembly by mineralocorticoid receptor. , 2005, Molecular cell.

[39]  S. Simons,et al.  Corepressor binding to progesterone and glucocorticoid receptors involves the activation function-1 domain and is inhibited by molybdate. , 2005, Molecular endocrinology.

[40]  H. Dyson,et al.  Intrinsically unstructured proteins and their functions , 2005, Nature Reviews Molecular Cell Biology.

[41]  D. Edwards,et al.  Mechanisms controlling agonist and antagonist potential of selective progesterone receptor modulators (SPRMs). , 2005, Seminars in reproductive medicine.

[42]  D. Volk,et al.  TATA box binding protein induces structure in the recombinant glucocorticoid receptor AF1 domain. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[43]  Raj Kumar,et al.  Induced alpha-helix structure in AF1 of the androgen receptor upon binding transcription factor TFIIF. , 2004, Biochemistry.

[44]  J. Gustafsson,et al.  Activation functions 1 and 2 of nuclear receptors: molecular strategies for transcriptional activation. , 2003, Molecular endocrinology.

[45]  K. Horwitz,et al.  Functional properties of the N-terminal region of progesterone receptors and their mechanistic relationship to structure , 2003, The Journal of Steroid Biochemistry and Molecular Biology.

[46]  Raj Kumar,et al.  Transactivation functions of the N-terminal domains of nuclear hormone receptors: protein folding and coactivator interactions. , 2003, Molecular endocrinology.

[47]  D. Edwards,et al.  Comparison of different antibodies for detection of progesterone receptor in breast cancer , 2002, Steroids.

[48]  T. Willson,et al.  Crystal Structure of the Glucocorticoid Receptor Ligand Binding Domain Reveals a Novel Mode of Receptor Dimerization and Coactivator Recognition , 2002, Cell.

[49]  David A. Agard,et al.  Structural characterization of a subtype-selective ligand reveals a novel mode of estrogen receptor antagonism , 2002, Nature Structural Biology.

[50]  T. Härd,et al.  The N-terminal Regions of Estrogen Receptor α and β Are Unstructured in Vitro and Show Different TBP Binding Properties* , 2001, The Journal of Biological Chemistry.

[51]  R. Métivier,et al.  Synergism between ERalpha transactivation function 1 (AF-1) and AF-2 mediated by steroid receptor coactivator protein-1: requirement for the AF-1 alpha-helical core and for a direct interaction between the N- and C-terminal domains. , 2001, Molecular endocrinology.

[52]  K. Horwitz,et al.  The N-terminal Region of Human Progesterone B-receptors , 2001, The Journal of Biological Chemistry.

[53]  Peter Scholz,et al.  Structural Evidence for Ligand Specificity in the Binding Domain of the Human Androgen Receptor , 2000, The Journal of Biological Chemistry.

[54]  M. A. Carrondo,et al.  Structural evidence for ligand specificity in the binding domain of the human androgen receptor. Implications for pathogenic gene mutations. , 2000, The Journal of biological chemistry.

[55]  D. Edwards,et al.  Differential hormone-dependent phosphorylation of progesterone receptor A and B forms revealed by a phosphoserine site-specific monoclonal antibody. , 2000, Molecular endocrinology.

[56]  J. Lee,et al.  Interdomain Signaling in a Two-domain Fragment of the Human Glucocorticoid Receptor* , 1999, The Journal of Biological Chemistry.

[57]  B. Katzenellenbogen,et al.  Estrogen receptor activation function 1 works by binding p160 coactivator proteins. , 1998, Molecular endocrinology.

[58]  T. Willson,et al.  Ligand binding and co-activator assembly of the peroxisome proliferator-activated receptor-γ , 1998, Nature.

[59]  P. Sigler,et al.  Atomic structure of progesterone complexed with its receptor , 1998, Nature.

[60]  D. Edwards,et al.  The Steroid Receptor Coactivator-1 Contains Multiple Receptor Interacting and Activation Domains That Cooperatively Enhance the Activation Function 1 (AF1) and AF2 Domains of Steroid Receptors* , 1998, The Journal of Biological Chemistry.

[61]  K. Horwitz,et al.  An N-terminal Inhibitory Function, IF, Suppresses Transcription by the A-isoform but Not the B-isoform of Human Progesterone Receptors* , 1998, The Journal of Biological Chemistry.

[62]  P. Giangrande,et al.  Mapping and Characterization of the Functional Domains Responsible for the Differential Activity of the A and B Isoforms of the Human Progesterone Receptor* , 1997, The Journal of Biological Chemistry.

[63]  Zbigniew Dauter,et al.  Molecular basis of agonism and antagonism in the oestrogen receptor , 1997, Nature.

[64]  R. Dickerson,et al.  How proteins recognize the TATA box. , 1996, Journal of molecular biology.

[65]  D. Edwards,et al.  Ligands induce conformational changes in the carboxyl-terminus of progesterone receptors which are detected by a site-directed antipeptide monoclonal antibody. , 1992, Molecular endocrinology.

[66]  H. Gronemeyer,et al.  A limiting factor mediates the differential activation of promoters by the human progesterone receptor isoforms. , 1992, The Journal of biological chemistry.

[67]  Robert Tjian,et al.  Two distinct transcription factors bind to the HSV thymidine kinase promoter in vitro , 1985, Cell.