An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development
暂无分享,去创建一个
R. Sekhon | C. Buell | N. Leon | S. Kaeppler | C. Hirsch | Brieanne Vaillancourt | Scott C. Stelpflug | C. R. Buell
[1] F. Hochholdinger,et al. LATERAL ROOT PRIMORDIA 1 of maize acts as a transcriptional activator in auxin signalling downstream of the Aux/IAA gene rootless with undetectable meristem 1 , 2015, Journal of experimental botany.
[2] H. Piepho,et al. A High-Resolution Tissue-Specific Proteome and Phosphoproteome Atlas of Maize Primary Roots Reveals Functional Gradients along the Root Axes1[OPEN] , 2015, Plant Physiology.
[3] James C. Schnable,et al. Nonsyntenic Genes Drive Highly Dynamic Complementation of Gene Expression in Maize Hybrids[W] , 2014, Plant Cell.
[4] Sanzhen Liu,et al. Roothairless5, which functions in maize (Zea mays L.) root hair initiation and elongation encodes a monocot-specific NADPH oxidase. , 2014, The Plant journal : for cell and molecular biology.
[5] T. Demura,et al. Laccases Direct Lignification in the Discrete Secondary Cell Wall Domains of Protoxylem1[W][OPEN] , 2014, Plant Physiology.
[6] J. Feijó,et al. Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature , 2014, BMC Plant Biology.
[7] Jinsheng Lai,et al. Dynamic Transcriptome Landscape of Maize Embryo and Endosperm Development1[W][OPEN] , 2014, Plant Physiology.
[8] X. Draye,et al. The Emerging Role of Reactive Oxygen Species Signaling during Lateral Root Development1[C][W] , 2014, Plant Physiology.
[9] Alan Lloyd,et al. Temporal patterns of gene expression in developing maize endosperm identified through transcriptome sequencing , 2014, Proceedings of the National Academy of Sciences.
[10] Xiandong Meng,et al. A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing , 2014, Scientific Reports.
[11] N. Suzuki,et al. ROS as key players in plant stress signalling. , 2014, Journal of experimental botany.
[12] Doreen Ware,et al. Regulatory modules controlling maize inflorescence architecture , 2014, Genome research.
[13] M. Margis-Pinheiro,et al. The effects of redox controls mediated by glutathione peroxidases on root architecture in Arabidopsis thaliana , 2014, Journal of experimental botany.
[14] Alex Feltus,et al. A Sorghum bicolor expression atlas reveals dynamic genotype-specific expression profiles for vegetative tissues of grain, sweet and bioenergy sorghums , 2014, BMC Plant Biology.
[15] Nicholas Stiffler,et al. POGs2: A Web Portal to Facilitate Cross-Species Inferences About Protein Architecture and Function in Plants , 2013, PloS one.
[16] Zhouxin Shen,et al. Reconstruction of protein networks from an atlas of maize seed proteotypes , 2013, Proceedings of the National Academy of Sciences.
[17] R. Dixon,et al. LACCASE Is Necessary and Nonredundant with PEROXIDASE for Lignin Polymerization during Vascular Development in Arabidopsis[C][W] , 2013, Plant Cell.
[18] M. Sauter,et al. Reactive oxygen species mediate growth and death in submerged plants , 2013, Front. Plant Sci..
[19] Zhou Du,et al. PlantGSEA: a gene set enrichment analysis toolkit for plant community , 2013, Nucleic Acids Res..
[20] C. Robin Buell,et al. Maize Gene Atlas Developed by RNA Sequencing and Comparative Evaluation of Transcriptomes Based on RNA Sequencing and Microarrays , 2013, PloS one.
[21] Yuhong Tang,et al. Establishment of the Lotus japonicus Gene Expression Atlas (LjGEA) and its use to explore legume seed maturation. , 2013, The Plant journal : for cell and molecular biology.
[22] P. Benfey,et al. High-resolution metabolic mapping of cell types in plant roots , 2013, Proceedings of the National Academy of Sciences.
[23] R. Sekhon,et al. Transcriptional and Metabolic Analysis of Senescence Induced by Preventing Pollination in Maize1[W][OA] , 2012, Plant Physiology.
[24] Edward S. Buckler,et al. Distinct Genetic Architectures for Male and Female Inflorescence Traits of Maize , 2011, PLoS genetics.
[25] R. Sekhon,et al. Utility of RNA Sequencing for Analysis of Maize Reproductive Transcriptomes , 2011 .
[26] N. Friedman,et al. Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2011, Nature Biotechnology.
[27] Youhuang Bai,et al. Root hair-specific expansins modulate root hair elongation in rice. , 2011, The Plant journal : for cell and molecular biology.
[28] R. Sekhon,et al. Genome-wide atlas of transcription during maize development. , 2011, The Plant journal : for cell and molecular biology.
[29] Zhiwei Cheng,et al. The bHLH transcription factor MYC3 interacts with the Jasmonate ZIM-domain proteins to mediate jasmonate response in Arabidopsis. , 2011, Molecular plant.
[30] Changfan Lin,et al. Root hair-specific EXPANSIN A7 is required for root hair elongation in Arabidopsis , 2011, Molecules and cells.
[31] Robert Turgeon,et al. The developmental dynamics of the maize leaf transcriptome , 2010, Nature Genetics.
[32] R. Dixon,et al. Flavonoids and Isoflavonoids: From Plant Biology to Agriculture and Neuroscience , 2010, Plant Physiology.
[33] Zhou Du,et al. agriGO: a GO analysis toolkit for the agricultural community , 2010, Nucleic Acids Res..
[34] Trupti Joshi,et al. An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants. , 2010, The Plant journal : for cell and molecular biology.
[35] L. Dolan,et al. A basic helix-loop-helix transcription factor controls cell growth and size in root hairs , 2010, Nature Genetics.
[36] Microbiologie. Basic-helix-loop-helix , 2010 .
[37] H. Piepho,et al. Specification of Cortical Parenchyma and Stele of Maize Primary Roots by Asymmetric Levels of Auxin, Cytokinin, and Cytokinin-Regulated Proteins1[C][W][OA] , 2009, Plant Physiology.
[38] Dawn H. Nagel,et al. The B73 Maize Genome: Complexity, Diversity, and Dynamics , 2009, Science.
[39] D. Galbraith,et al. Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis , 2009, Proceedings of the National Academy of Sciences.
[40] Mark Stitt,et al. A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize. , 2009, Plant, cell & environment.
[41] F. Hochholdinger,et al. Genetic and genomic dissection of maize root development and architecture. , 2009, Current opinion in plant biology.
[42] Hongyu Zhao,et al. A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies , 2009, Nature Genetics.
[43] S. Hake,et al. Translational Biology: From Arabidopsis Flowers to Grass Inflorescence Architecture , 2009, Plant Physiology.
[44] D. Janies,et al. GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses1[W][OA] , 2008, Plant Physiology.
[45] Marcel H. Schulz,et al. A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome , 2008, Science.
[46] G. Weiller,et al. A gene expression atlas of the model legume Medicago truncatula. , 2008, The Plant journal : for cell and molecular biology.
[47] B. Williams,et al. Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.
[48] Tom Beeckman,et al. Cytokinins Act Directly on Lateral Root Founder Cells to Inhibit Root Initiation[W] , 2007, The Plant Cell Online.
[49] Daniel L. Mace,et al. A High-Resolution Root Spatiotemporal Map Reveals Dominant Expression Patterns , 2007, Science.
[50] Nicholas J. Provart,et al. An “Electronic Fluorescent Pictograph” Browser for Exploring and Analyzing Large-Scale Biological Data Sets , 2007, PloS one.
[51] Thomas E. Royce,et al. Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification , 2007, Nucleic acids research.
[52] Richard D Vierstra,et al. The Arabidopsis EIN3 Binding F-Box Proteins EBF1 and EBF2 Have Distinct but Overlapping Roles in Ethylene Signaling[W] , 2007, The Plant Cell Online.
[53] A. Theologis,et al. ARF7 and ARF19 Regulate Lateral Root Formation via Direct Activation of LBD/ASL Genes in Arabidopsis[W] , 2007, The Plant Cell Online.
[54] Nigel S. Walker,et al. POGs/PlantRBP: a resource for comparative genomics in plants , 2006, Nucleic Acids Res..
[55] Michal J. Okoniewski,et al. Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations , 2006, BMC Bioinformatics.
[56] L. Dolan,et al. The role of reactive oxygen species in cell growth: lessons from root hairs. , 2006, Journal of experimental botany.
[57] M. Hawkesford,et al. Dynamics of Aerenchyma distribution in the cortex of sulfate-deprived adventitious roots of maize. , 2006, Annals of botany.
[58] Ute Baumann,et al. An atlas of gene expression from seed to seed through barley development , 2006, Functional & Integrative Genomics.
[59] Stefan R. Henz,et al. A gene expression map of Arabidopsis thaliana development , 2005, Nature Genetics.
[60] M. Sauer,et al. Genetic dissection of root formation in maize (Zea mays) reveals root-type specific developmental programmes. , 2004, Annals of botany.
[61] S. Rhee,et al. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. , 2004, The Plant journal : for cell and molecular biology.
[62] D. Shasha,et al. A Gene Expression Map of the Arabidopsis Root , 2003, Science.
[63] Shuichi Yanagisawa,et al. EIN3-Dependent Regulation of Plant Ethylene Hormone Signaling by Two Arabidopsis F Box Proteins EBF1 and EBF2 , 2003, Cell.
[64] Ari Pekka Mähönen,et al. APL regulates vascular tissue identity in Arabidopsis , 2003, Nature.
[65] Jonathan D. G. Jones,et al. Reactive oxygen species produced by NADPH oxidase regulate plant cell growth , 2003, Nature.
[66] Liangjiang Wang,et al. The phenylpropanoid pathway and plant defence-a genomics perspective. , 2002, Molecular plant pathology.
[67] Y. Benjamini,et al. THE CONTROL OF THE FALSE DISCOVERY RATE IN MULTIPLE TESTING UNDER DEPENDENCY , 2001 .
[68] Y. Bae,et al. Role of auxin-induced reactive oxygen species in root gravitropism. , 2001, Plant physiology.
[69] D. Straeten,et al. In the early response of Arabidopsis roots to ethylene, cell elongation is up- and down-regulated and uncoupled from differentiation. , 2001, Plant physiology.
[70] P. Benfey,et al. Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot. , 2000, Development.
[71] R. J. Pitts,et al. Auxin and ethylene promote root hair elongation in Arabidopsis. , 1998, The Plant journal : for cell and molecular biology.
[72] F. Baluška,et al. Specialized Zones of Development in Roots: View from the Cellular Level , 1996, Plant physiology.
[73] P. Benfey,et al. The SCARECROW Gene Regulates an Asymmetric Cell Division That Is Essential for Generating the Radial Organization of the Arabidopsis Root , 1996, Cell.
[74] L. Dolan,et al. Ethylene is a positive regulator of root hair development in Arabidopsis thaliana. , 1995, The Plant journal : for cell and molecular biology.
[75] M. Evans,et al. Specialized Zones of Development in Roots , 1995, Plant physiology.
[76] J. Lynch. Root Architecture and Plant Productivity , 1995, Plant physiology.
[77] S. F. Izmailov,et al. Tissue specificity of assimilation and transport of nitrogen in the root ofZea mays L. seedlings. I. Transformations of14C- sucrose and the nitrogen metabolism enzymes in cortex and stele , 1982, Biologia Plantarum.
[78] 张静,et al. Banana Ovate family protein MaOFP1 and MADS-box protein MuMADS1 antagonistically regulated banana fruit ripening , 2015 .
[79] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[80] X. Draye,et al. The emerging role of ROS signalling during lateral root development , 2014 .
[81] Sarah Hake,et al. Handbook of maize : its biology , 2009 .
[82] R. Schmidt,et al. Development of the Inflorescences , 2009 .
[83] M. Gerstein,et al. RNA-Seq: a revolutionary tool for transcriptomics , 2009, Nature Reviews Genetics.
[84] Pamela A. Silver,et al. Coupling and coordination in gene expression processes: a systems biology view , 2008, Nature Reviews Genetics.
[85] Qunfeng Dong,et al. MaizeGDB, the community database for maize genetics and genomics , 2004, Nucleic Acids Res..
[86] R. Aiken,et al. Root system regulation of whole plant growth. , 1996, Annual review of phytopathology.
[87] D. Degraaf,et al. Tissue specificity of , 1991 .