BMCMDA: a novel model for predicting human microbe-disease associations via binary matrix completion
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Siu-Ming Yiu | Jianyu Shi | Hua Huang | Yan-Ning Zhang | Jiang-Bo Cao | S. Yiu | Jian-Yu Shi | Jianyu Shi | Yan-Ning Zhang | Hua Huang | S. Yiu | Jiang-Bo Cao
[1] Emmanuel J. Candès,et al. A Singular Value Thresholding Algorithm for Matrix Completion , 2008, SIAM J. Optim..
[2] F. Bäckhed,et al. The gut microbiota — masters of host development and physiology , 2013, Nature Reviews Microbiology.
[3] Siu-Ming Yiu,et al. Predicting and understanding comprehensive drug-drug interactions via semi-nonnegative matrix factorization , 2018, BMC Systems Biology.
[4] Shareef M Dabdoub,et al. The subgingival microbiome of clinically healthy current and never smokers , 2014, The ISME Journal.
[5] Jian-Yu Shi,et al. Predicting binary, discrete and continued lncRNA-disease associations via a unified framework based on graph regression , 2017, BMC Medical Genomics.
[6] Olli Simell,et al. Gut Microbiome Metagenomics Analysis Suggests a Functional Model for the Development of Autoimmunity for Type 1 Diabetes , 2011, PloS one.
[7] Jennifer C. Drew,et al. Toward defining the autoimmune microbiome for type 1 diabetes , 2011, The ISME Journal.
[8] Siu-Ming Yiu,et al. Predicting combinative drug pairs towards realistic screening via integrating heterogeneous features , 2017, BMC Bioinformatics.
[9] Hui Yu,et al. Predicting Drug-Target Interactions via Within-Score and Between-Score , 2015, BioMed research international.
[10] E. Stewart. Growing Unculturable Bacteria , 2012, Journal of bacteriology.
[11] Emily R. Davenport,et al. Seasonal Variation in Human Gut Microbiome Composition , 2014, PloS one.
[12] José Mario Martínez,et al. Nonmonotone Spectral Projected Gradient Methods on Convex Sets , 1999, SIAM J. Optim..
[13] Lawrence A. David,et al. Diet rapidly and reproducibly alters the human gut microbiome , 2013, Nature.
[14] Peter Cimermancic,et al. A Systematic Analysis of Biosynthetic Gene Clusters in the Human Microbiome Reveals a Common Family of Antibiotics , 2014, Cell.
[15] Yasen Jiao,et al. Performance measures in evaluating machine learning based bioinformatics predictors for classifications , 2016, Quantitative Biology.
[16] BMC Medical Genetics BioMed Central , 2003 .
[17] J. Petrosino,et al. Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders , 2013, Cell.
[18] Siu-Ming Yiu,et al. Predicting Comprehensive Drug-Drug Interactions for New Drugs via Triple Matrix Factorization , 2017, IWBBIO.
[19] Carl Nathan,et al. Fresh Approaches to Anti-Infective Therapies , 2012, Science Translational Medicine.
[20] W E Moore,et al. Intestinal floras of populations that have a high risk of colon cancer , 1995, Applied and environmental microbiology.
[21] M. Crowell,et al. Human gut microbiota in obesity and after gastric bypass , 2009, Proceedings of the National Academy of Sciences.
[22] Zhixun Su,et al. Linearized Alternating Direction Method with Adaptive Penalty for Low-Rank Representation , 2011, NIPS.
[23] Marcus J. Claesson,et al. Genome-scale analyses of health-promoting bacteria: probiogenomics , 2009, Nature Reviews Microbiology.
[24] Katherine H. Huang,et al. Structure, Function and Diversity of the Healthy Human Microbiome , 2012, Nature.
[25] Zhu-Hong You,et al. A novel approach based on KATZ measure to predict associations of human microbiota with non‐infectious diseases , 2016, Bioinform..
[26] Jianyu Shi,et al. Predicting existing targets for new drugs base on strategies for missing interactions , 2016, BMC Bioinformatics.
[27] Ewout van den Berg,et al. 1-Bit Matrix Completion , 2012, ArXiv.
[28] D. Theriaque,et al. Intestinal microbial ecology in premature infants assessed with non-culture-based techniques. , 2010, The Journal of pediatrics.
[29] F. Bäckhed,et al. Obesity alters gut microbial ecology. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[30] Xing Chen,et al. RKNNMDA: Ranking-based KNN for MiRNA-Disease Association prediction , 2017, RNA biology.
[31] Pierre Cochat,et al. Efficacy and safety of Oxalobacter formigenes to reduce urinary oxalate in primary hyperoxaluria. , 2011, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.