Genome-wide identification of the auxin response factor (ARF) gene family and expression analysis of its role associated with pistil development in Japanese apricot (Prunus mume Sieb. et Zucc)

[1]  Xuemei Chen,et al.  AUXIN RESPONSE FACTOR 3 integrates the functions of AGAMOUS and APETALA2 in floral meristem determinacy. , 2014, The Plant journal : for cell and molecular biology.

[2]  L. Colombo,et al.  The effect of NGATHA altered activity on auxin signaling pathways within the Arabidopsis gynoecium , 2014, Front. Plant Sci..

[3]  Zhan-Bin Liu,et al.  Genome-wide identification, characterization and expression analysis of the auxin response factor gene family in Vitis vinifera , 2014, Plant Cell Reports.

[4]  R. Franks,et al.  Auxin and the Arabidopsis thaliana gynoecium. , 2013, Journal of experimental botany.

[5]  L. Hu,et al.  Genome-wide analysis of the auxin response factor gene family in cucumber. , 2013, Genetics and molecular research : GMR.

[6]  Zhen Zhang,et al.  High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot , 2012, BMC Genomics.

[7]  Nan Miao,et al.  Diversification, phylogeny and evolution of auxin response factor (ARF) family: insights gained from analyzing maize ARF genes , 2012, Molecular Biology Reports.

[8]  K. Ljung,et al.  The Arabidopsis YUCCA1 Flavin Monooxygenase Functions in the Indole-3-Pyruvic Acid Branch of Auxin Biosynthesis[W] , 2011, Plant Cell.

[9]  H. Kawaide,et al.  The main auxin biosynthesis pathway in Arabidopsis , 2011, Proceedings of the National Academy of Sciences.

[10]  J. Chory,et al.  Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis , 2011, Proceedings of the National Academy of Sciences.

[11]  M. Nei,et al.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.

[12]  Robert D. Finn,et al.  HMMER web server: interactive sequence similarity searching , 2011, Nucleic Acids Res..

[13]  Michael S. Barker,et al.  The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants , 2011, Science.

[14]  A. Sharma,et al.  Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development , 2011, Molecular Genetics and Genomics.

[15]  Gao Zhi-hong Analyses on pistil differentiation process and related biochemical indexes of two cultivars of Prunus mume , 2011 .

[16]  Zhen Zhang,et al.  Isolation and Characterization of an AGAMOUS Homologue PmAG from the Japanese Apricot (Prunus mume Sieb. et Zucc.) , 2011, Plant Molecular Biology Reporter.

[17]  H. El-Shemy,et al.  Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice. , 2009, Current issues in molecular biology.

[18]  E. Birney,et al.  Pfam: the protein families database , 2013, Nucleic Acids Res..

[19]  Zhen Zhang,et al.  Selection of reliable reference genes for gene expression studies in peach using real-time PCR , 2009, BMC Molecular Biology.

[20]  Qihui Zhu,et al.  Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family. , 2008, Gene.

[21]  G. Jürgens,et al.  The Evolving Complexity of the Auxin Pathway , 2008, The Plant Cell Online.

[22]  J. Bennetzen,et al.  The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants , 2008, Science.

[23]  Gerald A Tuskan,et al.  Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa , 2007, BMC Plant Biology.

[24]  Rodrigo Lopez,et al.  Clustal W and Clustal X version 2.0 , 2007, Bioinform..

[25]  B. Han,et al.  Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa). , 2007, Gene.

[26]  Ingo Dreyer,et al.  PlnTFDB: an integrative plant transcription factor database , 2007, BMC Bioinformatics.

[27]  Mukesh Jain,et al.  Genome-wide analysis, evolutionary expansion, and expression of early auxin-responsive SAUR gene family in rice (Oryza sativa). , 2006, Genomics.

[28]  A. Koltunow,et al.  AUXIN RESPONSE FACTOR8 Is a Negative Regulator of Fruit Initiation in Arabidopsis[W] , 2006, The Plant Cell Online.

[29]  Yunde Zhao,et al.  Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis. , 2006, Genes & development.

[30]  Ben Scheres,et al.  Polar PIN Localization Directs Auxin Flow in Plants , 2006, Science.

[31]  Zerihun Tadele,et al.  PIN Proteins Perform a Rate-Limiting Function in Cellular Auxin Efflux , 2006, Science.

[32]  S. Tiwari,et al.  The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs , 2005, Development.

[33]  J. Reed,et al.  AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana , 2005, Development.

[34]  Y. Eshed,et al.  Auxin Response Factors Mediate Arabidopsis Organ Asymmetry via Modulation of KANADI Activityw⃞ , 2005, The Plant Cell Online.

[35]  Joseph R. Ecker,et al.  Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation , 2005, Development.

[36]  Karen S. Osmont,et al.  A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Joseph R Ecker,et al.  NPH4/ARF7 and ARF19 promote leaf expansion and auxin-induced lateral root formation. , 2005, The Plant journal : for cell and molecular biology.

[38]  G. Hagen,et al.  AUXIN RESPONSE FACTOR7 Restores the Expression of Auxin-Responsive Genes in Mutant Arabidopsis Leaf Mesophyll Protoplastsw⃞ , 2005, The Plant Cell Online.

[39]  Ottoline Leyser,et al.  The Arabidopsis F-box protein TIR1 is an auxin receptor , 2005, Nature.

[40]  M. Estelle,et al.  The F-box protein TIR1 is an auxin receptor , 2005, Nature.

[41]  Jingchu Luo,et al.  Duplication and DNA segmental loss in the rice genome: implications for diploidization. , 2005, The New phytologist.

[42]  Mukesh Jain,et al.  The auxin-responsive GH3 gene family in rice (Oryza sativa) , 2005, Functional & Integrative Genomics.

[43]  Mukesh Jain,et al.  Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa) , 2005, Functional & Integrative Genomics.

[44]  R. Baeza-Yates,et al.  A rapid and efficient method for purifying high quality total RNA from peaches (Prunus persica) for functional genomics analyses. , 2005, Biological research.

[45]  G. Hagen,et al.  Overlapping and non-redundant functions of the Arabidopsis auxin response factors MONOPTEROS and NONPHOTOTROPIC HYPOCOTYL 4 , 2004, Development.

[46]  G. Hagen,et al.  Auxin-responsive gene expression: genes, promoters and regulatory factors , 2002, Plant Molecular Biology.

[47]  Yvan Saeys,et al.  Investigating ancient duplication events in the Arabidopsis genome , 2004, Journal of Structural and Functional Genomics.

[48]  G. Hagen,et al.  The Roles of Auxin Response Factor Domains in Auxin-Responsive Transcription Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.008417. , 2003, The Plant Cell Online.

[49]  Klaas Vandepoele,et al.  The hidden duplication past of Arabidopsis thaliana , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[50]  K. Ljung,et al.  FLOOZY of petunia is a flavin mono-oxygenase-like protein required for the specification of leaf and flower architecture. , 2002, Genes & development.

[51]  G. Hagen,et al.  Auxin Response Factors , 2001, Journal of Plant Growth Regulation.

[52]  A. Theologis,et al.  IAA17/AXR3: Biochemical Insight into an Auxin Mutant Phenotype , 2001, Plant Cell.

[53]  J. Chory,et al.  A role for flavin monooxygenase-like enzymes in auxin biosynthesis. , 2001, Science.

[54]  M. Lynch,et al.  The evolutionary fate and consequences of duplicate genes. , 2000, Science.

[55]  G. Hagen,et al.  Dimerization and DNA binding of auxin response factors. , 1999, The Plant journal : for cell and molecular biology.

[56]  G. Hagen,et al.  Activation and repression of transcription by auxin-response factors. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[57]  A. Müller,et al.  Regulation of polar auxin transport by AtPIN1 in Arabidopsis vascular tissue. , 1998, Science.

[58]  G. Hagen,et al.  How does auxin turn on genes? , 1998, Plant physiology.

[59]  C. Hardtke,et al.  The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development , 1998, The EMBO journal.

[60]  G. Hagen,et al.  Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. , 1997, The Plant cell.

[61]  J. Kim,et al.  Protein-protein interactions among the Aux/IAA proteins. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[62]  G. Hagen,et al.  ARF1, a transcription factor that binds to auxin response elements. , 1997, Science.

[63]  A. Theologis,et al.  DNA elements responsive to auxin , 1996, BioEssays : news and reviews in molecular, cellular and developmental biology.

[64]  A. Theologis,et al.  Early Genes and Auxin Action , 1996, Plant physiology.

[65]  P. Zambryski,et al.  Arabidopsis gynoecium structure in the wild and in ettin mutants. , 1995, Development.

[66]  P. J. Davies Plant hormones : physiology, biochemistry and molecular biology , 1995 .

[67]  C. Bell,et al.  Requirement of the Auxin Polar Transport System in Early Stages of Arabidopsis Floral Bud Formation. , 1991, The Plant cell.