Multiscale simulations of protein-facilitated membrane remodeling.
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[1] T. Fischer. Bending stiffness of lipid bilayers. III. Gaussian curvature , 1992 .
[2] Michael M. Kozlov,et al. How proteins produce cellular membrane curvature , 2006, Nature Reviews Molecular Cell Biology.
[3] G. Voth,et al. Understanding the role of amphipathic helices in N-BAR domain driven membrane remodeling. , 2013, Biophysical journal.
[4] L. Lucy. A numerical approach to the testing of the fission hypothesis. , 1977 .
[5] L. Johannes,et al. Bending "on the rocks"--a cocktail of biophysical modules to build endocytic pathways. , 2014, Cold Spring Harbor perspectives in biology.
[6] Gregory A Voth,et al. Solvent-free lipid bilayer model using multiscale coarse-graining. , 2009, The journal of physical chemistry. B.
[7] J. Nagle,et al. Structure and interactions of fully hydrated dioleoylphosphatidylcholine bilayers. , 1998, Biophysical journal.
[8] T. Pollard,et al. A role for F-BAR protein Rga7p during cytokinesis in S. pombe , 2015, Journal of Cell Science.
[9] Anand Srivastava,et al. A Hybrid Approach for Highly Coarse-grained Lipid Bilayer Models. , 2013, Journal of chemical theory and computation.
[10] B. Berne. Modification of the overlap potential to mimic a linear site-site potential , 1981 .
[11] Jim Pfaendtner,et al. A systematic methodology for defining coarse-grained sites in large biomolecules. , 2008, Biophysical journal.
[12] Gregory A. Voth,et al. Membrane tension controls the assembly of curvature-generating proteins , 2015, Nature Communications.
[13] D. Marsh. Lateral pressure profile, spontaneous curvature frustration, and the incorporation and conformation of proteins in membranes. , 2007, Biophysical journal.
[14] H. Hägerstrand,et al. On the role of anisotropy of membrane constituents in formation of a membrane neck during budding of a multicomponent membrane. , 2007, Journal of biomechanics.
[15] K. Gould,et al. Oligomerization but Not Membrane Bending Underlies the Function of Certain F-BAR Proteins in Cell Motility and Cytokinesis. , 2015, Developmental cell.
[16] Gregory A. Voth,et al. Direct observation of Bin/amphiphysin/Rvs (BAR) domain-induced membrane curvature by means of molecular dynamics simulations , 2006, Proceedings of the National Academy of Sciences.
[17] Gregory A Voth,et al. Factors influencing local membrane curvature induction by N-BAR domains as revealed by molecular dynamics simulations. , 2008, Biophysical journal.
[18] H. Noguchi. Two- or three-step assembly of banana-shaped proteins coupled with shape transformation of lipid membranes , 2014, 1408.5262.
[19] Adam Frost,et al. F-BAR proteins join the BAR family fold. , 2007, Structure.
[20] P. Canham. The minimum energy of bending as a possible explanation of the biconcave shape of the human red blood cell. , 1970, Journal of theoretical biology.
[21] Harvey T. McMahon,et al. Membrane curvature and mechanisms of dynamic cell membrane remodelling , 2005, Nature.
[22] J. Ross,et al. A derivation and comparison of two equations (Landau–Ginzburg and Cahn) for the kinetics of phase transitions , 1976 .
[23] Gregory A Voth,et al. Coupling field theory with continuum mechanics: a simulation of domain formation in giant unilamellar vesicles. , 2005, Biophysical journal.
[24] I. Bahar,et al. Gaussian Dynamics of Folded Proteins , 1997 .
[25] G. Voth,et al. Hierarchical coarse-graining strategy for protein-membrane systems to access mesoscopic scales. , 2010, Faraday discussions.
[26] Hiroshi Noguchi,et al. Estimation of the bending rigidity and spontaneous curvature of fluid membranes in simulations. , 2011, Physical review. E, Statistical, nonlinear, and soft matter physics.
[27] H. McMahon,et al. Bar Domains and Membrane Curvature: Bringing Your Curves to the Bar , 2022 .
[28] V Kralj-Iglic,et al. Stable tubular microexovesicles of the erythrocyte membrane induced by dimeric amphiphiles. , 2000, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.
[29] Markus R Wenk,et al. Amphiphysin 2 (Bin1) and T-Tubule Biogenesis in Muscle , 2002, Science.
[30] N. Sauvonnet,et al. Endophilin marks and controls a clathrin-independent endocytic pathway , 2014, Nature.
[31] J. Fournier,et al. Nontopological saddle-splay and curvature instabilities from anisotropic membrane inclusions. , 1996, Physical review letters.
[32] Gregory A Voth,et al. Systematic multiscale simulation of membrane protein systems. , 2009, Current opinion in structural biology.
[33] I. Haworth,et al. Roles of Amphipathic Helices and the Bin/Amphiphysin/Rvs (BAR) Domain of Endophilin in Membrane Curvature Generation* , 2010, The Journal of Biological Chemistry.
[34] Gregory A Voth,et al. Coarse-grained modeling of the actin filament derived from atomistic-scale simulations. , 2006, Biophysical journal.
[35] G. Voth,et al. Hybrid coarse-graining approach for lipid bilayers at large length and time scales. , 2009, The journal of physical chemistry. B.
[36] N. Ramakrishnan,et al. Membrane-mediated aggregation of curvature-inducing nematogens and membrane tubulation. , 2013, Biophysical journal.
[37] Oyeon Kum,et al. Smooth particle applied mechanics , 2006 .
[38] Gregory A Voth,et al. Reconstructing protein remodeled membranes in molecular detail from mesoscopic models. , 2011, Physical chemistry chemical physics : PCCP.
[39] Alan E Mark,et al. On the Validation of Molecular Dynamics Simulations of Saturated and cis-Monounsaturated Phosphatidylcholine Lipid Bilayers: A Comparison with Experiment. , 2010, Journal of chemical theory and computation.
[40] P. S. Sunil Kumar,et al. Monte Carlo simulations of fluid vesicles , 2015, Journal of physics. Condensed matter : an Institute of Physics journal.
[41] C. G. Hoover,et al. Links between microscopic and macroscopic fluid mechanics , 2003 .
[42] Gregory A Voth,et al. Protein-mediated transformation of lipid vesicles into tubular networks. , 2013, Biophysical journal.
[43] Gregory A Voth,et al. New insights into BAR domain-induced membrane remodeling. , 2009, Biophysical journal.
[44] Gregory A Voth,et al. Membrane remodeling from N-BAR domain interactions: insights from multi-scale simulation. , 2007, Biophysical journal.
[45] L. Johannes,et al. Endophilin-A2 functions in membrane scission in clathrin-independent endocytosis , 2014, Nature.
[46] Gregory A Voth,et al. Multiscale computer simulation of the immature HIV-1 virion. , 2010, Biophysical journal.
[47] L. Traub. F-BAR/EFC Domain Proteins: Some Assembly Required. , 2015, Developmental cell.
[48] Petra Schwille,et al. Amphipathic DNA origami nanoparticles to scaffold and deform lipid membrane vesicles. , 2015, Angewandte Chemie.
[49] H. Noguchi. Membrane tubule formation by banana-shaped proteins with or without transient network structure , 2015, Scientific Reports.
[50] Gregory A Voth,et al. Water under the BAR. , 2010, Biophysical journal.
[51] L. Peachey,et al. Helicoids in the T system and striations of frog skeletal muscle fibers seen by high voltage electron microscopy. , 1978, Biophysical journal.
[52] G. Voth,et al. Solvent-Free, Highly Coarse-Grained Models for Charged Lipid Systems , 2014, Journal of chemical theory and computation.
[53] Anand Srivastava,et al. Linear aggregation of proteins on the membrane as a prelude to membrane remodeling , 2013, Proceedings of the National Academy of Sciences.
[54] P. Camilli,et al. Accessory factors in clathrin-dependent synaptic vesicle endocytosis , 2000, Nature Reviews Neuroscience.
[55] E. Evans. A new material concept for the red cell membrane. , 1973, Biophysical journal.
[56] Sandra L. Schmid,et al. Regulated portals of entry into the cell , 2003, Nature.
[57] Jim Pfaendtner,et al. Systematic multiscale parameterization of heterogeneous elastic network models of proteins. , 2008, Biophysical journal.
[58] Gregory A. Voth,et al. The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models. , 2008, The Journal of chemical physics.
[59] P. Kinnunen,et al. Molecular Mechanisms of Membrane Deformation by I-BAR Domain Proteins , 2009, Current Biology.
[60] Gregory A. Voth,et al. Systematic coarse-graining of a multicomponent lipid bilayer. , 2009, The journal of physical chemistry. B.
[61] G. Voth,et al. Multiscale simulation of protein mediated membrane remodeling. , 2010, Seminars in cell & developmental biology.
[62] Gregory A Voth,et al. Coupling field theory with mesoscopic dynamical simulations of multicomponent lipid bilayers. , 2004, Biophysical journal.
[63] H. McMahon,et al. Mechanisms of endocytosis. , 2009, Annual review of biochemistry.
[64] B. Layton,et al. Determination of the mechanical properties of DOPC:DOPS liposomes using an image procession algorithm and micropipette-aspiration techniques. , 2010, Chemistry and physics of lipids.
[65] G. Voth,et al. When Physics Takes Over: BAR Proteins and Membrane Curvature. , 2015, Trends in cell biology.
[66] N. Ramakrishnan,et al. Role of disclinations in determining the morphology of deformable fluid interfaces , 2012, 1202.3401.
[67] Gregory A Voth,et al. Membrane binding by the endophilin N-BAR domain. , 2009, Biophysical journal.
[68] Reinhard Lipowsky,et al. The conformation of membranes , 1991, Nature.
[69] W. Helfrich. Elastic Properties of Lipid Bilayers: Theory and Possible Experiments , 1973, Zeitschrift fur Naturforschung. Teil C: Biochemie, Biophysik, Biologie, Virologie.
[70] E. Evans,et al. Effect of chain length and unsaturation on elasticity of lipid bilayers. , 2000, Biophysical journal.
[71] Gregory A Voth,et al. A multiscale coarse-graining method for biomolecular systems. , 2005, The journal of physical chemistry. B.
[72] Gregory A Voth,et al. The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models. , 2008, The Journal of chemical physics.
[73] Gregory A Voth,et al. A second generation mesoscopic lipid bilayer model: connections to field-theory descriptions of membranes and nonlocal hydrodynamics. , 2006, The Journal of chemical physics.
[74] Ralf Langen,et al. Mechanism of endophilin N‐BAR domain‐mediated membrane curvature , 2006, The EMBO journal.