Extension of the PDDG/PM3 and PDDG/MNDO semiempirical molecular orbital methods to the halogens
暂无分享,去创建一个
William L. Jorgensen | Cristiano Ruch Werneck Guimarães | Ivan Tubert-Brohman | Matthew P. Repasky | W. L. Jorgensen | Ivan Tubert-Brohman | C. Guimarães
[1] K M Merz,et al. New developments in applying quantum mechanics to proteins. , 2001, Current opinion in structural biology.
[2] J. Stewart. Optimization of parameters for semiempirical methods II. Applications , 1989 .
[3] Henry S. Rzepa,et al. Ground states of molecules. 53. MNDO calculations for molecules containing chlorine , 1983 .
[4] James J. P. Stewart,et al. MOPAC: A semiempirical molecular orbital program , 1990, J. Comput. Aided Mol. Des..
[5] Henry S. Rzepa,et al. Ground states of molecules. 40. MNDO results for molecules containing fluorine , 2002 .
[6] William L. Jorgensen,et al. A Quantum Mechanical and Molecular Mechanical Method Based on CM1A Charges: Applications to Solvent Effects on Organic Equilibria and Reactions , 1998 .
[7] J. Stewart. Optimization of parameters for semiempirical methods I. Method , 1989 .
[8] M. Dewar,et al. Ground States of Molecules. 38. The MNDO Method. Approximations and Parameters , 1977 .
[9] Nathalie Reuter,et al. Frontier Bonds in QM/MM Methods: A Comparison of Different Approaches , 2000 .
[10] W. Richards,et al. Insights into Chorismate Mutase Catalysis from a Combined QM/MM Simulation of the Enzyme Reaction , 1995 .
[11] J. W. Larson,et al. Strong hydrogen bonding in gas-phase anions. An ion cyclotron resonance determination of fluoride binding energetics to Broensted acids from gas-phase fluoride exchange equilibrium measurements , 1983 .
[12] Manuel F. Ruiz-López,et al. Calibration of the Quantum/Classical Hamiltonian in Semiempirical QM/MM AM1 and PM3 Methods , 2000 .
[13] James J. P. Stewart,et al. Ground states of molecules. 67. MNDO Calculations for compounds containing iodine , 1983 .
[14] Cristiano Ruch Werneck Guimarães,et al. Contributions of conformational compression and preferential transition state stabilization to the rate enhancement by chorismate mutase. , 2003, Journal of the American Chemical Society.
[15] M. Schwartz,et al. Systematic errors in DFT calculations of haloalkane heats of formation , 2003, J. Comput. Chem..
[16] Michael J. S. Dewar,et al. Extension of AM1 to the halogens , 1988 .
[17] Jill E. Gready,et al. Hybrid Quantum and Molecular Mechanical (QM/MM) Studies on the Pyruvate to l-Lactate Interconversion in l-Lactate Dehydrogenase , 1997 .
[18] ab Mikhail N. Glukhovtsev,et al. Gas-Phase Non-Identity SN2 Reactions of Halide Anions with Methyl Halides: A High-Level Computational Study , 1995 .
[19] Martin J. Field,et al. A Hybrid-Potential Free-Energy Study of the Isomerization Step of the Acetohydroxy Acid Isomeroreductase Reaction , 2000 .
[20] Manuel F. Ruiz-López,et al. MODELING OF PEPTIDE HYDROLYSIS BY THERMOLYSIN. A SEMIEMPIRICAL AND QM/MM STUDY , 1998 .
[21] William L. Jorgensen,et al. Improved semiempirical heats of formation through the use of bond and group equivalents , 2002, J. Comput. Chem..
[22] Charles W. Bauschlicher,et al. A comparison of the accuracy of different functionals , 1995 .
[23] Cristiano Ruch Werneck Guimarães,et al. Investigation of solvent effects for the Claisen rearrangement of chorismate to prephenate: mechanistic interpretation via near attack conformations. , 2003, Journal of the American Chemical Society.
[24] Shawn T. Brown,et al. Assessment of Density Functional Theory for Model SN2 Reactions: CH3X + F- (X = F, Cl, CN, OH, SH, NH2, PH2) , 2001 .
[25] J. W. Larson,et al. Hydrogen bonding in gas-phase anions. An experimental investigation of the interaction between chloride ion and Broensted acids from ion cyclotron resonance chloride exchange equilibriums , 1984 .
[26] V. A. Tikhomirov,et al. A study of the carbon-halogen bond breaking in tert-butyl halides by the PM3 quantum chemical method , 1995 .
[27] Walter Thiel,et al. Extension of MNDO to d Orbitals: Parameters and Results for the Halogens , 1992 .
[28] Eamonn F. Healy,et al. Development and use of quantum mechanical molecular models. 76. AM1: a new general purpose quantum mechanical molecular model , 1985 .
[29] M. Field,et al. A hybrid potential reaction path and free energy study of the chorismate mutase reaction. , 2001, Journal of the American Chemical Society.
[30] William L. Jorgensen,et al. PDDG/PM3 and PDDG/MNDO: Improved semiempirical methods , 2002, J. Comput. Chem..
[31] William L. Jorgensen,et al. QM/MM Simulations for Diels−Alder Reactions in Water: Contribution of Enhanced Hydrogen Bonding at the Transition State to the Solvent Effect† , 2002 .
[32] Peter Botschwina,et al. Coupled cluster calculations for the SN2 reaction Cl− + CH3Br → ClCH3 + Br− , 2000 .
[33] Kamaldeep K. Chohan,et al. QM/MM studies show substantial tunneling for the hydrogen-transfer reaction in methylamine dehydrogenase. , 2001, Journal of the American Chemical Society.