Independent losses of a xenobiotic receptor across teleost evolution

[1]  K. Jakobsen,et al.  Descriptor : Whole genome sequencing data and de novo draft assemblies for 66 teleost species , 2017 .

[2]  Reinhold Hanel,et al.  Evolution of the immune system influences speciation rates in teleost fishes , 2016, Nature Genetics.

[3]  C. Bizarro,et al.  Single and mixture effects of aquatic micropollutants studied in precision-cut liver slices of Atlantic cod (Gadus morhua). , 2016, Aquatic toxicology.

[4]  James R. Knight,et al.  An improved genome assembly uncovers prolific tandem repeats in Atlantic cod , 2016, bioRxiv.

[5]  A. Nederbragt,et al.  Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions , 2016, Scientific Reports.

[6]  J. Giesy,et al.  Families of Nuclear Receptors in Vertebrate Models: Characteristic and Comparative Toxicological Perspective , 2015, Scientific Reports.

[7]  M. E. Hahn,et al.  Regulation of pregnane-X-receptor, CYP3A and P-glycoprotein genes in the PCB-resistant killifish (Fundulus heteroclitus) population from New Bedford Harbor. , 2015, Aquatic toxicology.

[8]  J. Goldstone,et al.  Role of pregnane X receptor and aryl hydrocarbon receptor in transcriptional regulation of pxr, CYP2, and CYP3 genes in developing zebrafish. , 2015, Toxicological sciences : an official journal of the Society of Toxicology.

[9]  Joanna Y. Wilson,et al.  Expression patterns of cytochrome P450 3B and 3C genes in model fish species. , 2014, Comparative biochemistry and physiology. Toxicology & pharmacology : CBP.

[10]  P. Olsvik,et al.  Precision-cut liver slices of Atlantic cod (Gadus morhua): an in vitro system for studying the effects of environmental contaminants. , 2014, Aquatic toxicology.

[11]  Xiaoyu Li,et al.  Complementary DNA Cloning and Functional Characterization of Cytochrome P450 3A138 in Common Carp (Cyprinus carpio L.) , 2014, Journal of biochemical and molecular toxicology.

[12]  E. Birney,et al.  Pfam: the protein families database , 2013, Nucleic Acids Res..

[13]  K. Jakobsen,et al.  Correction: Unraveling the Evolution of the Atlantic Cod’s (Gadus morhua L.) Alternative Immune Strategy , 2013, PLoS ONE.

[14]  K. Jakobsen,et al.  Unraveling the Evolution of the Atlantic Cod’s (Gadus morhua L.) Alternative Immune Strategy , 2013, PloS one.

[15]  W. Tzou,et al.  Regulation of zebrafish CYP3A65 transcription by AHR2. , 2013, Toxicology and applied pharmacology.

[16]  Z. Chang,et al.  Molecular cloning and expression analysis of cytochrome P450 3A gene in the turbot Scophthalmus maximus , 2013, Fish Physiology and Biochemistry.

[17]  Peter C. Wainwright,et al.  Resolution of ray-finned fish phylogeny and timing of diversification , 2012, Proceedings of the National Academy of Sciences.

[18]  Anders Goksøyr,et al.  Mass spectrometric analyses of microsomal cytochrome P450 isozymes isolated from β-naphthoflavone-treated Atlantic cod (Gadus morhua) liver reveal insights into the cod CYPome. , 2012, Aquatic toxicology.

[19]  Inge Jonassen,et al.  The genome sequence of Atlantic cod reveals a unique immune system , 2011, Nature.

[20]  R. C. Sundt,et al.  Effects of Produced Water on Reproductive Parameters in Prespawning Atlantic Cod (Gadus morhua) , 2011, Journal of toxicology and environmental health. Part A.

[21]  S. Ekins,et al.  Evolution of promiscuous nuclear hormone receptors: LXR, FXR, VDR, PXR, and CAR , 2011, Molecular and Cellular Endocrinology.

[22]  K. Yoshinari,et al.  Activated Sterol Regulatory Element-Binding Protein-2 Suppresses Hepatocyte Nuclear Factor-4-Mediated Cyp3a11 Expression in Mouse Liver , 2011, Molecular Pharmacology.

[23]  Zhong-hua Cai,et al.  Molecular Evolution and Functional Divergence of the Cytochrome P450 3 (CYP3) Family in Actinopterygii (Ray-Finned Fish) , 2010, PloS one.

[24]  M. Celander,et al.  Interactions of pharmaceuticals and other xenobiotics on hepatic pregnane X receptor and cytochrome P450 3A signaling pathway in rainbow trout (Oncorhynchus mykiss). , 2010, Aquatic toxicology.

[25]  S. Taudien,et al.  The unique complexity of the CYP3A4 upstream region suggests a nongenetic explanation of its expression variability , 2010, Pharmacogenetics and genomics.

[26]  P. Olsvik,et al.  Are Atlantic Cod in Store Lungegårdsvann, a Seawater Recipient in Bergen, Affected by Environmental Contaminants? A qRT-PCR Survey , 2009, Journal of toxicology and environmental health. Part A.

[27]  B. Blumberg,et al.  The steroid and xenobiotic receptor (SXR), beyond xenobiotic metabolism , 2009, Nuclear receptor signaling.

[28]  J. Goldstone.  Environmental sensing and response genes in cnidaria: the chemical defensome in the sea anemone Nematostella vectensis , 2008, Cell Biology and Toxicology.

[29]  P. Olsvik,et al.  Correction: Selection of reference genes for qRT-PCR examination of wild populations of Atlantic cod Gadus morhua , 2008, BMC Research Notes.

[30]  P. Olsvik,et al.  Selection of reference genes for qRT-PCR examination of wild populations of Atlantic cod Gadus morhua , 2008, BMC Research Notes.

[31]  S. Ekins,et al.  Evolution of pharmacologic specificity in the pregnane X receptor , 2008, BMC Evolutionary Biology.

[32]  B. Blumberg,et al.  Activation of Steroid and Xenobiotic Receptor (SXR, NR1I2) and Its Orthologs in Laboratory, Toxicologic, and Genome Model Species , 2008, Environmental health perspectives.

[33]  R. Pollenz,et al.  Functional analysis of cis-regulatory regions within the dioxin-inducible CYP1A promoter/enhancer region from zebrafish (Danio rerio). , 2007, Chemico-biological interactions.

[34]  V. Laudet,et al.  Unexpected Novel Relational Links Uncovered by Extensive Developmental Profiling of Nuclear Receptor Expression , 2007, PLoS genetics.

[35]  Y. Fujii‐Kuriyama,et al.  Dioxin receptor is a ligand-dependent E3 ubiquitin ligase , 2007, Nature.

[36]  A. Salvetti,et al.  Cloning, tissue expression, and inducibility of CYP 3A79 from sea bass (Dicentrarchus labrax) , 2007, Journal of biochemical and molecular toxicology.

[37]  Vincent Laudet,et al.  Overview of Nomenclature of Nuclear Receptors , 2006, Pharmacological Reviews.

[38]  M. Scally,et al.  The chemical defensome: environmental sensing and response genes in the Strongylocentrotus purpuratus genome. , 2006, Developmental biology.

[39]  W. Xie,et al.  Xenobiotic receptor meets NF-κB, a collision in the small bowel , 2006 .

[40]  B. Blumberg,et al.  Mutual repression between steroid and xenobiotic receptor and NF-kappaB signaling pathways links xenobiotic metabolism and inflammation. , 2006, The Journal of clinical investigation.

[41]  B. Larsen,et al.  Comparison of protein expression in plasma from nonylphenol and bisphenol A-exposed Atlantic cod (Gadus morhua) and turbot (Scophthalmus maximus) by use of SELDI-TOF. , 2006, Aquatic toxicology.

[42]  D. Buhler,et al.  CYP3C1, the first member of a new cytochrome P450 subfamily found in zebrafish (Danio rerio). , 2006, Biochemical and biophysical research communications.

[43]  T. A. Richardson,et al.  Regulation of drug-metabolizing enzymes and transporters in inflammation. , 2006, Annual review of pharmacology and toxicology.

[44]  A. Arsenault,et al.  Toll-like receptor-4 regulation of hepatic Cyp3a11 metabolism in a mouse model of LPS-induced CNS inflammation. , 2005, American journal of physiology. Gastrointestinal and liver physiology.

[45]  D. Buhler,et al.  Constitutive and xenobiotics-induced expression of a novel CYP3A gene from zebrafish larva. , 2005, Toxicology and applied pharmacology.

[46]  A. Sandelin,et al.  Prediction of nuclear hormone receptor response elements. , 2005, Molecular endocrinology.

[47]  Taise Bresolin,et al.  Expression of PXR, CYP3A and MDR1 genes in liver of zebrafish. , 2005, Comparative biochemistry and physiology. Toxicology & pharmacology : CBP.

[48]  M. Celander,et al.  Interactions between xenoestrogens and ketoconazole on hepatic CYP1A and CYP3A, in juvenile Atlantic cod (Gadus morhua) , 2005, Comparative hepatology.

[49]  Micheline Piquette-Miller,et al.  The Involvement of the Pregnane X Receptor in Hepatic Gene Regulation during Inflammation in Mice , 2005, Journal of Pharmacology and Experimental Therapeutics.

[50]  A. Svardal,et al.  Effects of alkylphenols on CYP1A and CYP3A expression in first spawning Atlantic cod (Gadus morhua). , 2004, Aquatic toxicology.

[51]  John P. Huelsenbeck,et al.  MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..

[52]  Timothy Rose,et al.  CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design , 2003, Nucleic Acids Res..

[53]  M. Haussler,et al.  Cloning of a functional vitamin D receptor from the lamprey (Petromyzon marinus), an ancient vertebrate lacking a calcified skeleton and teeth. , 2003, Endocrinology.

[54]  D. Buhler,et al.  Cloning, tissue distribution, and functional studies of a new cytochrome P450 3A subfamily member, CYP3A45, from rainbow trout (Oncorhynchus mykiss) intestinal ceca. , 2003, Archives of biochemistry and biophysics.

[55]  B. Blumberg,et al.  Benzoate X Receptors α and β Are Pharmacologically Distinct and Do Not Function as Xenobiotic Receptors* , 2002, The Journal of Biological Chemistry.

[56]  Timothy M Willson,et al.  Pregnane X receptor (PXR), constitutive androstane receptor (CAR), and benzoate X receptor (BXR) define three pharmacologically distinct classes of nuclear receptors. , 2002, Molecular endocrinology.

[57]  Y. Liu,et al.  Coordinate regulation of xenobiotic and bile acid homeostasis by pregnane X receptor. , 2001, Drug metabolism and disposition: the biological fate of chemicals.

[58]  Á. Pascual,et al.  Nuclear hormone receptors and gene expression. , 2001, Physiological reviews.

[59]  P. Guzelian,et al.  Cyp3A regulation: from pharmacology to nuclear receptors. , 2001, Drug metabolism and disposition: the biological fate of chemicals.

[60]  C. Handschin,et al.  CXR, a chicken xenobiotic-sensing orphan nuclear receptor, is related to both mammalian pregnane X receptor (PXR) and constitutive androstane receptor (CAR). , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[61]  S. Kullman,et al.  Identification and characterization of a cDNA encoding cytochrome P450 3A from the fresh water teleost medaka (Oryzias latipes). , 2000, Archives of biochemistry and biophysics.

[62]  B. Goodwin,et al.  The orphan human pregnane X receptor mediates the transcriptional activation of CYP3A4 by rifampicin through a distal enhancer module. , 1999, Molecular pharmacology.

[63]  Elizabeth Landrum Michalets,et al.  Update: Clinically Significant Cytochrome P‐450 Drug Interactions , 1998, Pharmacotherapy.

[64]  E. Morgan.  Regulation of cytochromes P450 during inflammation and infection. , 1997, Drug metabolism reviews.

[65]  J. Stegeman,et al.  Isolation of a cytochrome P450 3A cDNA sequence (CYP3A30) from the marine teleost Fundulus heteroclitus and phylogenetic analyses of CYP3A genes. , 1997, Biochemical and biophysical research communications.

[66]  R. Tukey,et al.  Trans-species gene transfer for analysis of glucocorticoid-inducible transcriptional activation of transiently expressed human CYP3A4 and rabbit CYP3A6 in primary cultures of adult rat and rabbit hepatocytes. , 1996, Molecular pharmacology.

[67]  T. Collier,et al.  Immunohistochemical localization of CYP1A and CYP3A-like isozymes in hepatic and extrahepatic tissues of Atlantic cod (Gadus morhua L.), a marine fish. , 1994, Toxicology and applied pharmacology.

[68]  J. Whitlock,et al.  Protein-DNA interactions at a dioxin-responsive enhancer. Analysis of six bona fide DNA-binding sites for the liganded Ah receptor. , 1993, The Journal of biological chemistry.

[69]  J. Mathis,et al.  Identification of multiple regulatory elements on the human cytochrome P450IA1 gene. , 1988, Carcinogenesis.

[70]  A. Goksøyr,et al.  Species characteristics of the hepatic xenobiotic and steroid biotransformation systems of two teleost fish, Atlantic cod (Gadus morhua) and rainbow trout (Salmo gairdneri). , 1987, Toxicology and applied pharmacology.

[71]  A. Goksøyr,et al.  Regioselective metabolism of phenanthrene in Atlantic cod (Gadus morhua): studies on the effects of monooxygenase inducers and role of cytochromes P-450. , 1986, Chemico-biological interactions.

[72]  A. Goksøyr,et al.  Purification of hepatic microsomal cytochromes P-450 from beta-naphthoflavone-treated Atlantic cod (Gadus morhua), a marine teleost fish. , 1985, Biochimica et biophysica acta.

[73]  B. MacKenzie,et al.  Global patterns in marine predatory fish , 2017, Nature Ecology & Evolution.

[74]  L. Wojnowski,et al.  Evolutionary history and functional characterization of the amphibian xenosensor CAR. , 2012, Molecular endocrinology.

[75]  J. Goldstone,et al.  10 - Perspectives on zebrafish as a model in environmental toxicology , 2010 .

[76]  K. Fent,et al.  Identification of a CYP3A form (CYP3A126) in fathead minnow (Pimephales promelas) and characterisation of putative CYP3A enzyme activity , 2010, Analytical and bioanalytical chemistry.

[77]  Fu-jun Liu,et al.  The far and distal enhancers in the CYP3A4 gene co-ordinate the proximal promoter in responding similarly to the pregnane X receptor but differentially to hepatocyte nuclear factor-4alpha. , 2008, The Biochemical journal.

[78]  W. Xie,et al.  Xenobiotic receptor meets NF-kappaB, a collision in the small bowel. , 2006, Cell metabolism.

[79]  K. Nakata,et al.  Nuclear receptor-mediated transcriptional regulation in Phase I, II, and III xenobiotic metabolizing systems. , 2006, Drug metabolism and pharmacokinetics.

[80]  A. Arukwe,et al.  The xenoestrogen 4-nonylphenol modulates hepatic gene expression of pregnane X receptor, aryl hydrocarbon receptor, CYP3A and CYP1A1 in juvenile Atlantic salmon (Salmo salar). , 2006, Comparative biochemistry and physiology. Toxicology & pharmacology : CBP.

[81]  L D Burgoon,et al.  Comparative analysis of dioxin response elements in human, mouse and rat genomic sequences. , 2004, Nucleic acids research.

[82]  B. Blumberg,et al.  Benzoate X receptors alpha and beta are pharmacologically distinct and do not function as xenobiotic receptors. , 2002, The Journal of biological chemistry.

[83]  Vincent Laudet,et al.  The nuclear receptor factsbook , 2002 .

[84]  A. Goksøyr,et al.  Use of cytochrome P450 1A (CYP1A) in fish as a biomarker of aquatic pollution. , 1995, Archives of toxicology. Supplement. = Archiv fur Toxikologie. Supplement.

[85]  A. Goksøyr,et al.  Response of hepatic xenobiotic metabolizing enzymes in rainbow trout (Oncorhynchus mykiss) and cod (Gadus morhua) to 2,3,7,8-tetrachlorodibenzo-p-dioxin (2,3,7,8-TCDD) , 1994 .

[86]  J. Stegeman,et al.  Response of cod (Gadus morhua) larvae and juveniles to oil exposure detected with anti-cod cytochrome P-450c IgG and anti-scup cytochrome P-450E MAb 1-12-3 , 1988 .