The cost of DNA bending.
暂无分享,去创建一个
P. Privalov | C. Crane-Robinson | A. Dragan | Anatoly I Dragan | Peter L Privalov | Colyn Crane-Robinson
[1] G G Hu,et al. The B-DNA dodecamer at high resolution reveals a spine of water on sodium. , 1998, Biochemistry.
[2] B. Luisi,et al. Characterization of sequence-specific DNA binding by the transcription factor Oct-1. , 2000, Biochemistry.
[3] Michelle D. Wang,et al. Stretching of single collapsed DNA molecules. , 2000, Biophysical journal.
[4] A. Rich,et al. Asymmetric lateral distribution of unshielded phosphate groups in nucleosomal DNA and its role in DNA bending. , 1979, Proceedings of the National Academy of Sciences of the United States of America.
[5] Rudolf Grosschedl,et al. The HMG domain of lymphoid enhancer factor 1 bends DNA and facilitates assembly of functional nucleoprotein structures , 1992, Cell.
[6] J. Shriver. Protein Structure, Stability, and Interactions , 2009, Methods in Molecular Biology.
[7] T. Steitz,et al. Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees , 1991, Science.
[8] L. A. Jacobson,et al. Structural and thermodynamic strategies for site-specific DNA binding proteins. , 2000, Structure.
[9] R M Sweet,et al. The structure of a chromosomal high mobility group protein–DNA complex reveals sequence‐neutral mechanisms important for non‐sequence‐specific DNA recognition , 1999, The EMBO journal.
[10] R. Allemann,et al. Thermodynamics of DNA binding of MM17, a 'single chain dimer' of transcription factor MASH-1. , 2000, Nucleic acids research.
[11] P. Privalov,et al. DNA binding and bending by HMG boxes: energetic determinants of specificity. , 2004, Journal of molecular biology.
[12] F. Crick,et al. Kinky helix , 1975, Nature.
[13] Helen M. Berman,et al. Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface. , 1997, Journal of molecular biology.
[14] W. Olson,et al. Bending of DNA by asymmetric charge neutralization: all-atom energy simulations. , 2002, Journal of the American Chemical Society.
[15] P N Goodfellow,et al. SRY, like HMG1, recognizes sharp angles in DNA. , 1992, The EMBO journal.
[16] P. Privalov,et al. DNA binding of a non-sequence-specific HMG-D protein is entropy driven with a substantial non-electrostatic contribution. , 2003, Journal of molecular biology.
[17] A. Gronenborn,et al. Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex , 1995, Cell.
[18] P. Privalov,et al. Assembling the human IFN-beta enhanceosome in solution. , 2008, Journal of molecular biology.
[19] K. Wüthrich,et al. NMR observation of individual molecules of hydration water bound to DNA duplexes: direct evidence for a spine of hydration water present in aqueous solution. , 1992, Nucleic Acids Research.
[20] Rob Phillips,et al. Exact theory of kinkable elastic polymers. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.
[21] S. Timoshenko,et al. Theory of elasticity , 1975 .
[22] H R Drew,et al. Structure of a B-DNA dodecamer. III. Geometry of hydration. , 1981, Journal of molecular biology.
[23] G. S. Manning. The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides , 1978, Quarterly Reviews of Biophysics.
[24] Helen M. Berman,et al. Structure of the CAP-DNA Complex at 2.5 Å Resolution: A Complete Picture of the Protein-DNA Interface , 1996 .
[25] Martin Egli,et al. The Dickerson-Drew B-DNA Dodecamer Revisited-At Atomic Resolution , 1998 .
[26] M. Record,et al. Analysis of equilibrium and kinetic measurements to determine thermodynamic origins of stability and specificity and mechanism of formation of site-specific complexes between proteins and helical DNA. , 1991, Methods in enzymology.
[27] Nahum Shiffeldrim,et al. Cyclization of short DNA fragments and bending fluctuations of the double helix. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[28] P. Privalov,et al. Stability and DNA binding ability of the DNA binding domains of interferon regulatory factors 1 and 3. , 2005, Biochemistry.
[29] N. Suzuki,et al. Complicated water orientations in the minor groove of the B-DNA decamer d(CCATTAATGG)2 observed by neutron diffraction measurements , 2005, Nucleic acids research.
[30] R. Dickerson,et al. DNA bending: the prevalence of kinkiness and the virtues of normality. , 1998, Nucleic acids research.
[31] A. Rich,et al. An estimate of the extent of folding of nucleosomal DNA by laterally asymmetric neutralization of phosphate groups. , 1989, Journal of biomolecular structure & dynamics.
[32] P. Privalov,et al. Forces driving the binding of homeodomains to DNA. , 2006, Biochemistry.
[33] J. Widom,et al. DNA twisting flexibility and the formation of sharply looped protein-DNA complexes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[34] P. Privalov,et al. The energetics of HMG box interactions with DNA: thermodynamics of the DNA binding of the HMG box from mouse sox-5. , 1999, Journal of molecular biology.
[35] H R Drew,et al. Ordered water structure around a B-DNA dodecamer. A quantitative study. , 1983, Journal of molecular biology.
[36] P. Privalov,et al. The extended arms of DNA-binding domains: a tale of tails. , 2006, Trends in biochemical sciences.
[37] D. Goodsell,et al. The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps. , 1994, Journal of molecular biology.
[38] R. Dickerson,et al. Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G. , 1999, Journal of molecular biology.
[39] G. K. Ackers,et al. Calorimetric analysis of lambda cI repressor binding to DNA operator sites. , 1995, Biochemistry.
[40] David A. Case,et al. Structural basis for DNA bending by the architectural transcription factor LEF-1 , 1995, Nature.
[41] M. Vologodskaia,et al. Contribution of the intrinsic curvature to measured DNA persistence length. , 2002, Journal of molecular biology.
[42] R. C. Johnson,et al. The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures. , 1993, Genes & development.
[43] E. Liepinsh,et al. Minor groove hydration of DNA in aqueous solution: sequence-dependent next neighbor effect of the hydration lifetimes in d(TTAA)2 segments measured by NMR spectroscopy. , 1996, Nucleic acids research.
[44] L. Archer,et al. DNA bending stiffness on small length scales. , 2008, Physical review letters.
[45] M. Manoharan,et al. X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution. , 1998, Biopolymers.
[46] E. Siggia,et al. Entropic elasticity of lambda-phage DNA. , 1994, Science.
[47] Jonathan Widom,et al. Spontaneous sharp bending of double-stranded DNA. , 2004, Molecular cell.
[48] H R Drew,et al. Structure of a B-DNA dodecamer: conformation and dynamics. , 1981, Proceedings of the National Academy of Sciences of the United States of America.
[49] P. Privalov,et al. DNA hydration studied by pressure perturbation scanning microcalorimetry. , 2009, Biopolymers.
[50] Alexander Vologodskii,et al. Kinking the double helix by bending deformation , 2007, Nucleic acids research.
[51] M. Record,et al. Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts. , 1998, Advances in protein chemistry.
[52] P. Privalov. Microcalorimetry of proteins and their complexes. , 2009, Methods in molecular biology.
[53] P. Privalov,et al. Thermodynamic signature of GCN4-bZIP binding to DNA indicates the role of water in discriminating between the AP-1 and ATF/CREB sites. , 2004, Journal of molecular biology.
[54] G. N. Savin,et al. Theory of elasticity and plasticity , 1970 .
[55] K Furukawa,et al. Thermodynamics of specific and non-specific DNA binding by the c-Myb DNA-binding domain. , 1998, Journal of molecular biology.
[56] G. S. Manning. Is a small number of charge neutralizations sufficient to bend nucleosome core DNA onto its superhelical ramp? , 2003, Journal of the American Chemical Society.
[57] P. Privalov,et al. What drives proteins into the major or minor grooves of DNA? , 2007, Journal of molecular biology.
[58] T. Richmond,et al. Crystal structure of the nucleosome core particle at 2.8 Å resolution , 1997, Nature.
[59] P. Privalov,et al. Energetics of the specific binding interaction of the first three zinc fingers of the transcription factor TFIIIA with its cognate DNA sequence , 2000, Proteins.
[60] A. Sarvazyan,et al. Influence of base composition, base sequence, and duplex structure on DNA hydration: apparent molar volumes and apparent molar adiabatic compressibilities of synthetic and natural DNA duplexes at 25 degrees C. , 1994, Biochemistry.