论文信息 - High-speed microbial community profiling - 字舞流文

High-speed microbial community profiling

A precomputed database of lineage-restricted reference genes yields a fast and accurate tool that uses sequence similarity alone to compute clade abundances from shotgun metagenomic data sets.

Andrey Tovchigrechko | Daniel H Haft

[1] S. Salzberg,et al. Phymm and PhymmBL: Metagenomic Phylogenetic Classification with Interpolated Markov Models , 2009, Nature Methods.

[2] M. Pop,et al. Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences , 2011, BMC Genomics.

[3] I. Rigoutsos,et al. Accurate phylogenetic classification of variable-length DNA fragments , 2007, Nature Methods.

[4] Peter Meinicke,et al. Mixture models for analysis of the taxonomic composition of metagenomes , 2011, Bioinform..

[5] Li C. Xia,et al. Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads , 2011, PloS one.

[6] C. Huttenhower,et al. Metagenomic microbial community profiling using unique clade-specific marker genes , 2012, Nature Methods.