Extended excess hazard models for spatially dependent survival data.

Relative survival represents the preferred framework for the analysis of population cancer survival data. The aim is to model the survival probability associated to cancer in the absence of information about the cause of death. Recent data linkage developments have allowed for incorporating the place of residence or the place where patients receive treatment into the population cancer data bases; however, modeling this spatial information has received little attention in the relative survival setting. We propose a flexible parametric class of spatial excess hazard models (along with inference tools), named ``Relative Survival Spatial General Hazard'' (RS-SGH), that allows for the inclusion of fixed and spatial effects in both time-level and hazard-level components. We illustrate the performance of the proposed model using an extensive simulation study, and provide guidelines about the interplay of sample size, censoring, and model misspecification. We present two case studies, using real data from colon cancer patients in England, aiming at answering epidemiological questions that require the use of a spatial model. These case studies illustrate how a spatial model can be used to identify geographical areas with low cancer survival, as well as how to summarize such a model through marginal survival quantities and spatial effects.

[1]  J. Mateu,et al.  Modeling infectious disease dynamics: Integrating contact tracing-based stochastic compartment and spatio-temporal risk models , 2022, Spatial Statistics.

[2]  G. Marra,et al.  A unifying framework for flexible excess hazard modelling with applications in cancer epidemiology , 2022, Journal of the Royal Statistical Society: Series C (Applied Statistics).

[3]  J. Carpenter,et al.  Variation in colon cancer survival for patients living and receiving care in London, 2006–2013: does where you live matter? , 2021, Journal of Epidemiology & Community Health.

[4]  Danilo Alvares,et al.  A tractable Bayesian joint model for longitudinal and survival data , 2021, Statistics in medicine.

[5]  S. Lipsitz,et al.  Semiparametric analysis of clustered interval‐censored survival data using soft Bayesian additive regression trees (SBART) , 2020, Biometrics.

[6]  Paula Moraga,et al.  Geospatial Health Data: Modeling and Visualization with R-Inla and Shiny , 2019 .

[7]  Stephen J Mooney,et al.  Bayesian hierarchical spatial models: Implementing the Besag York Mollié model in stan. , 2019, Spatial and spatio-temporal epidemiology.

[8]  M. Coleman,et al.  Impact of national cancer policies on cancer survival trends and socioeconomic inequalities in England, 1996-2013: population based study , 2018, British Medical Journal.

[9]  K. Mengersen,et al.  Spatial variation in cancer incidence and survival over time across Queensland, Australia. , 2017, Spatial and spatio-temporal epidemiology.

[10]  Jiqiang Guo,et al.  Stan: A Probabilistic Programming Language. , 2017, Journal of statistical software.

[11]  Kerrie L. Mengersen,et al.  A flexible parametric approach to examining spatial variation in relative survival , 2016, Statistics in medicine.

[12]  Bernard Rachet,et al.  A multilevel excess hazard model to estimate net survival on hierarchical data allowing for non‐linear and non‐proportional effects of covariates , 2016, Statistics in medicine.

[13]  Li Li,et al.  Spatial extended hazard model with application to prostate cancer survival , 2015, Biometrics.

[14]  Helena Carreira,et al.  Global surveillance of cancer survival 1995–2009: analysis of individual data for 25 676 887 patients from 279 population-based registries in 67 countries (CONCORD-2) , 2015, The Lancet.

[15]  Janez Stare,et al.  On Estimation in Relative Survival , 2012, Biometrics.

[16]  Sw. Banerjee,et al.  Hierarchical Modeling and Analysis for Spatial Data , 2003 .

[17]  R. Henderson,et al.  Modeling Spatial Variation in Leukemia Survival Data , 2002 .

[18]  Louise Ryan,et al.  Modeling Spatial Survival Data Using Semiparametric Frailty Models , 2002, Biometrics.

[19]  Nicholas P. Jewell,et al.  On a general class of semiparametric hazards regression models , 2001 .

[20]  Ying Qing Chen,et al.  Analysis of Accelerated Hazards Models , 2000 .

[21]  J. Besag,et al.  Bayesian image restoration, with two applications in spatial statistics , 1991 .

[22]  J. Estève,et al.  Relative survival and the estimation of net survival: elements for further discussion. , 1990, Statistics in medicine.

[23]  Antonio Ciampi,et al.  Extended hazard regression for censored survival data with covariates : a spline approximation for the baseline hazard function , 1987 .

[24]  I. James,et al.  Linear regression with censored data , 1979 .

[25]  J. Ibrahim,et al.  Handbook of survival analysis , 2014 .

[26]  B. Carlin,et al.  Frailty modeling for spatially correlated survival data, with application to infant mortality in Minnesota. , 2003, Biostatistics.

[27]  Bradley P. Carlin,et al.  Hierarchical Multivarite CAR Models for Spatio-Temporally Correlated Survival Data , 2002 .

[28]  J. Besag Spatial Interaction and the Statistical Analysis of Lattice Systems , 1974 .