Development of an amplicon-based sequencing approach in response to the global emergence of mpox
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P. Hemarajata | J. Sevinsky | D. Park | N. Green | S. Schmedes | H. Mostafa | C. Vogels | N. Grubaugh | R. Huard | S. Smole | Xiong Wang | C. Aquino | V. Borges | J. P. Gomes | Daniel J. Park | G. Gallagher | G. Churchwell | A. Muyombwe | L. Vieira | J. Razeq | C. Chaguza | Rachel Harrington | M. McHugh | Richard C. Huard | R. S. Salvato | R. B. Barcellos | Amary Fall | R. Dewar | B. McGruder | S. Duarte | M. Breban | Jonathan Wild | Philip A. Lee | D. Sobral | M. Pedrosa | J. Kenicer | K. Templeton | M. Doucette | Kevin G. Libuit | M. Plumb | Curtis J. Kapsak | C. Nishimura | Kutluhan Incekara | F. M. Godinho | Erika Buzby | Selina Clancy | Seana Cofsky | Luc A. Gagne | Joshua Hall | Jacob M Garrigues | Sean Sierra-Patev | Kristin Carpenter-Azevedo | C. Pearson | Jian Huang | E. Gagnon | Ethan Reever | Rita Ferreira | Daniela Santos | Isabella M Savino | Karinda Felton | Nyjil Hayward | Allison Naumann | Neel Greer | D. M. Maloney | Abigail B. Parker | Katharine Mathers | Aimee Ceniseros | Nicholas F. G. Chen | S. Ash | S. Cotton | Holly Miller | M. Bajwa | Ria Allman | Chrispin Chaguza | Joel R. Sevinsky | R. Salvato | F. Godinho
[1] N. K. Shah,et al. An Mpox-Related Death in the United States. , 2023, The New England journal of medicine.
[2] C. Carrington,et al. Toward a global virus genomic surveillance network , 2023, Cell Host & Microbe.
[3] P. Hemarajata,et al. Identification of Human Monkeypox Virus Genome Deletions That Impact Diagnostic Assays , 2022, Journal of clinical microbiology.
[4] G. Wallau,et al. Possible Occupational Infection of Healthcare Workers with Monkeypox Virus, Brazil , 2022, Emerging infectious diseases.
[5] H Zhao,et al. Genomic deletions and rearrangements in monkeypox virus from the 2022 outbreak, USA , 2022, bioRxiv.
[6] M. Kraemer,et al. Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus , 2022, PLoS biology.
[7] A. Antinori,et al. Monkeypox Virus Infection in Humans across 16 Countries - April-June 2022. , 2022, The New England journal of medicine.
[8] N. Green,et al. Rapid Diagnostic Testing for Response to the Monkeypox Outbreak — Laboratory Response Network, United States, May 17–June 30, 2022 , 2022, MMWR. Morbidity and mortality weekly report.
[9] J. Blanco,et al. Frequent detection of monkeypox virus DNA in saliva, semen, and other clinical samples from 12 patients, Barcelona, Spain, May to June 2022 , 2022, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.
[10] D. Sobral,et al. Phylogenomic characterization and signs of microevolution in the 2022 multi-country outbreak of monkeypox virus , 2022, Nature Medicine.
[11] Todd G. Smith,et al. Multiple lineages of Monkeypox virus detected in the United States, 2021- 2022 , 2022, bioRxiv.
[12] J. Walley,et al. Global human monkeypox outbreak: atypical presentation demanding urgent public health action , 2022, The Lancet. Microbe.
[13] Jennifer L. Small,et al. Clinical features and management of human monkeypox: a retrospective observational study in the UK , 2022, The Lancet. Infectious diseases.
[14] A. Christoffels,et al. The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance , 2022, Science.
[15] A. Azman,et al. Global landscape of SARS-CoV-2 genomic surveillance and data sharing , 2022, Nature Genetics.
[16] P. Fariselli,et al. SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files , 2021, Bioengineering.
[17] Andrew D Smith,et al. Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore , 2020, bioRxiv.
[18] Jaime Fern'andez del R'io,et al. Array programming with NumPy , 2020, Nature.
[19] C. Chiu,et al. Clinical metagenomics , 2019, Nature Reviews Genetics.
[20] P. Lemey,et al. Tracking virus outbreaks in the twenty-first century , 2018, Nature Microbiology.
[21] Karthik Gangavarapu,et al. An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar , 2018, Genome Biology.
[22] A. Lauring,et al. Complexities of Viral Mutation Rates , 2018, Journal of Virology.
[23] N. Segata,et al. Shotgun metagenomics, from sampling to analysis , 2017, Nature Biotechnology.
[24] Trevor Bedford,et al. Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples , 2017, Nature Protocols.
[25] C. Wilke. Streamlined Plot Theme and Plot Annotations for 'ggplot2' , 2015 .
[26] Andrew Rambaut,et al. Real-time digital pathogen surveillance — the time is now , 2015, Genome Biology.
[27] Yihui Xie,et al. Create Interactive Web Maps with the JavaScript 'Leaflet'Library , 2015 .
[28] Rachel S. G. Sealfon,et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak , 2014, Science.
[29] S. Shchelkunov,et al. Species-specific identification of variola, monkeypox, cowpox, and vaccinia viruses by multiplex real-time PCR assay , 2011, Journal of virological methods.
[30] I. Damon,et al. Real-time PCR assays for the specific detection of monkeypox virus West African and Congo Basin strain DNA , 2010, Journal of virological methods.
[31] Aaron R. Quinlan,et al. BEDTools: a flexible suite of utilities for comparing genomic features , 2010, Bioinform..
[32] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[33] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[34] Bartek Wilczynski,et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics , 2009, Bioinform..
[35] G. Pauli,et al. Orthopoxvirus Detection in Environmental Specimens during Suspected Bioterror Attacks: Inhibitory Influences of Common Household Products , 2007, Applied and Environmental Microbiology.
[36] I. Damon,et al. Detection of monkeypox virus with real-time PCR assays , 2006, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.
[37] R. Jordan,et al. An Orally Bioavailable Antipoxvirus Compound (ST-246) Inhibits Extracellular Virus Formation and Protects Mice from Lethal Orthopoxvirus Challenge , 2005, Journal of Virology.
[38] H. Ellerbrok,et al. Detection of Orthopoxvirus DNA by Real-Time PCR and Identification of Variola Virus DNA by Melting Analysis , 2004, Journal of Clinical Microbiology.
[39] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .