Draft Genome Sequence of the Endosymbiont “Candidatus Ruthia magnifica” UCD-CM (Phylum Proteobacteria)

ABSTRACT Here, we present the draft genome of the endosymbiont “Candidatus Ruthia magnifica” UCD-CM, a member of the phylum Proteobacteria, found from the gills of a deep-sea giant clam, Calyptogena magnifica. The assembly consists of 1,160,249 bp contained in 18 contigs.

[1]  Holly M. Bik,et al.  PhyloSift: phylogenetic analysis of genomes and metagenomes , 2014, PeerJ.

[2]  J. Eisen,et al.  Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups , 2013, PloS one.

[3]  M. Facciotti,et al.  An Integrated Pipeline for de Novo Assembly of Microbial Genomes , 2012, PloS one.

[4]  J. Eisen,et al.  Complete genome sequence of Candidatus Ruthia magnifica , 2010, Standards in genomic sciences.

[5]  Richard Durbin,et al.  Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .

[6]  Rick L. Stevens,et al.  The RAST Server: Rapid Annotations using Subsystems Technology , 2008, BMC Genomics.

[7]  J A Eisen,et al.  The Calyptogena magnifica Chemoautotrophic Symbiont Genome , 2007, Science.

[8]  D. Yoerger,et al.  Deep submergence synergy , 2003 .

[9]  Dana R. Yoerger,et al.  Deep submergence synergy: Alvin and ABE explore the gálapagos rift at 86°W , 2003 .

[10]  Cheryl R. Kuske,et al.  Small-Scale DNA Sample Preparation Method for Field PCR Detection of Microbial Cells and Spores in Soil , 1998, Applied and Environmental Microbiology.

[11]  J. Childress,et al.  Variation in the hydrothermal vent clam, Calyptogen magnifica, at the Rose Garden vent on the Galapagos spreading center , 1988 .

[12]  C. Cavanaugh Symbiotic chemoautotrophic bacteria in marine invertebrates from sulphide-rich habitats , 1983, Nature.

[13]  G. Somero,et al.  Primary production in deep-sea hydrothermal vent organisms: roles of sulfide-oxidizing bacteria , 1982 .