A phylogenomic analysis of the Actinomycetales mce operons
暂无分享,去创建一个
[1] S. Fortune,et al. Characterization of mycobacterial virulence genes through genetic interaction mapping. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[2] K. Awai,et al. A phosphatidic acid-binding protein of the chloroplast inner envelope membrane involved in lipid trafficking. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[3] K. Tabbara,et al. Clinical relevance of virulence genes in Campylobacter jejuni isolates in Bahrain. , 2006, Journal of medical microbiology.
[4] D. Yero,et al. Computational identification of beta-barrel outer-membrane proteins in Mycobacterium tuberculosis predicted proteomes as putative vaccine candidates. , 2006, Tuberculosis.
[5] W. Müller,et al. PCR detection of virulence-associated genes in Campylobacter jejuni strains with differential ability to invade Caco-2 cells and to colonize the chick gut. , 2006, Veterinary microbiology.
[6] P. Alifano,et al. Identification of a Meningococcal l-Glutamate ABC Transporter Operon Essential for Growth in Low-Sodium Environments , 2006, Infection and Immunity.
[7] N. Casali,et al. Regulation of the Mycobacterium tuberculosis mce1 Operon , 2006, Journal of bacteriology.
[8] Cathy H. Wu,et al. The Universal Protein Resource (UniProt): an expanding universe of protein information , 2005, Nucleic Acids Res..
[9] Robert D. Finn,et al. Pfam: clans, web tools and services , 2005, Nucleic Acids Res..
[10] Amos Bairoch,et al. The PROSITE database , 2005, Nucleic Acids Res..
[11] A. Otto,et al. Molecular analysis of the interaction between cardosin A and phospholipase Dα , 2005, The FEBS journal.
[12] K. Awai,et al. Mutation of the TGD1 Chloroplast Envelope Protein Affects Phosphatidate Metabolism in Arabidopsisw⃞ , 2005, The Plant Cell Online.
[13] D. Korsak,et al. Prevalence of potential virulence markers in Polish Campylobacter jejuni and Campylobacter coli isolates obtained from hospitalized children and from chicken carcasses. , 2005, Journal of medical microbiology.
[14] G. von Heijne,et al. Materials and Methods Figs. S1 to S3 References and Notes Global Topology Analysis of the Escherichia Coli Inner Membrane Proteome , 2022 .
[15] A. Cataldi,et al. Mutation in mce operons attenuates Mycobacterium tuberculosis virulence. , 2005, Microbes and infection.
[16] V. Brahmachari,et al. Comparison of mammalian cell entry operons of mycobacteria: in silico analysis and expression profiling. , 2005, FEMS immunology and medical microbiology.
[17] Cathy H. Wu,et al. InterPro, progress and status in 2005 , 2004, Nucleic Acids Res..
[18] E. Dassa,et al. Inventory and comparative analysis of rice and Arabidopsis ATP-binding cassette (ABC) systems. , 2004, Journal of molecular biology.
[19] S. Brunak,et al. Improved prediction of signal peptides: SignalP 3.0. , 2004, Journal of molecular biology.
[20] Sudhir Kumar,et al. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment , 2004, Briefings Bioinform..
[21] G. Crooks,et al. WebLogo: a sequence logo generator. , 2004, Genome research.
[22] A. Anderson,et al. Isolation and Characterization of Polycyclic Aromatic Hydrocarbon–Degrading Mycobacterium Isolates from Soil , 2004, Microbial Ecology.
[23] P. Alifano,et al. Regulation and differential expression of gdhA encoding NADP‐specific glutamate dehydrogenase in Neisseria meningitidis clinical isolates , 2004, Molecular microbiology.
[24] N. Casali,et al. Hypervirulent mutant of Mycobacterium tuberculosis resulting from disruption of the mce1 operon , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[25] Christopher M. Sassetti,et al. Genetic requirements for mycobacterial survival during infection , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[26] J. Froehlich,et al. A permease‐like protein involved in ER to thylakoid lipid transfer in Arabidopsis , 2003, The EMBO journal.
[27] W. Boos,et al. Prokaryotic Binding Protein‐Dependent ABC Transporters , 2003 .
[28] C. DeLisi,et al. The society of genes: networks of functional links between genes from comparative genomics , 2002, Genome Biology.
[29] A. Cataldi,et al. Negative transcriptional regulation of the mce3 operon in Mycobacterium tuberculosis. , 2002, Microbiology.
[30] S. Verjovski-Almeida,et al. Whole-Genome Analysis of Transporters in the Plant Pathogen Xylella fastidiosa , 2002, Microbiology and Molecular Biology Reviews.
[31] J. Betts,et al. Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profiling , 2002, Molecular microbiology.
[32] István Simon,et al. The HMMTOP transmembrane topology prediction server , 2001, Bioinform..
[33] G. Schoolnik,et al. The Mycobacterium tuberculosis ECF sigma factor σE: role in global gene expression and survival in macrophages † , 2001, Molecular microbiology.
[34] Dirk Schnappinger,et al. Regulation of the Mycobacterium tuberculosis hypoxic response gene encoding α-crystallin , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[35] E. Dassa,et al. The ABC of ABCS: a phylogenetic and functional classification of ABC systems in living organisms. , 2001, Research in microbiology.
[36] Xi Jiang,et al. Molecular Characterization of Invasive and Noninvasive Campylobacter jejuni and Campylobacter coli Isolates , 2001, Journal of Clinical Microbiology.
[37] Sangwei Lu,et al. Recombinant Mycobacterium tuberculosis protein associated with mammalian cell entry , 2001, Cellular microbiology.
[38] E. Koonin,et al. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. , 2001, Genome research.
[39] B. Barrell,et al. Massive gene decay in the leprosy bacillus , 2001, Nature.
[40] G von Heijne,et al. Consensus predictions of membrane protein topology , 2000, FEBS letters.
[41] R. Bishop,et al. The bacterial lipocalins. , 2000, Biochimica et biophysica acta.
[42] J. Content,et al. The ATP binding cassette (ABC) transport systems of Mycobacterium tuberculosis. , 2000, FEMS microbiology reviews.
[43] James C. Sacchettini,et al. Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase , 2000, Nature.
[44] G J Barton,et al. Application of multiple sequence alignment profiles to improve protein secondary structure prediction , 2000, Proteins.
[45] E. Koonin,et al. The STAS domain — a link between anion transporters and antisigma-factor antagonists , 2000, Current Biology.
[46] S T Cole,et al. Analysis of the proteome of Mycobacterium tuberculosis in silico. , 1999, Tubercle and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.
[47] M. Klein,et al. Disruption of the mycobacterial cell entry gene of Mycobacterium bovis BCG results in a mutant that exhibits a reduced invasiveness for epithelial cells. , 1999, FEMS microbiology letters.
[48] D. Eisenberg,et al. Detecting protein function and protein-protein interactions from genome sequences. , 1999, Science.
[49] D. Eisenberg,et al. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[50] G. Fichant,et al. Inventory, assembly and analysis of Bacillus subtilis ABC transport systems. , 1999, Journal of molecular biology.
[51] A. Cataldi,et al. A 12.7 kb fragment of the Mycobacterium tuberculosis genome is not present in Mycobacterium bovis. , 1999, Microbiology.
[52] R. Overbeek,et al. The use of gene clusters to infer functional coupling. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[53] S. Payne,et al. Identification of Two Shigella flexneriChromosomal Loci Involved in Intercellular Spreading , 1998, Infection and Immunity.
[54] D. Lim,et al. Isolation and Characterization of Toluene-Sensitive Mutants from the Toluene-Resistant Bacterium Pseudomonas putida GM73 , 1998, Journal of bacteriology.
[55] Erik L. L. Sonnhammer,et al. A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences , 1998, ISMB.
[56] T. Südhof,et al. C2-domains, Structure and Function of a Universal Ca2+-binding Domain* , 1998, The Journal of Biological Chemistry.
[57] B. Barrell,et al. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence , 1998, Nature.
[58] K. Linton,et al. The Escherichia coli ATP‐binding cassette (ABC) proteins , 1998, Molecular microbiology.
[59] J. Thompson,et al. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.
[60] D. Lipman,et al. A genomic perspective on protein families. , 1997, Science.
[61] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[62] M. Hofnung,et al. Subunit interactions in ABC transporters: a conserved sequence in hydrophobic membrane proteins of periplasmic permeases defines an important site of interaction with the ATPase subunits , 1997, The EMBO journal.
[63] J. Ramos,et al. Mechanisms for Solvent Tolerance in Bacteria* , 1997, The Journal of Biological Chemistry.
[64] A. Lupas. Coiled coils: new structures and new functions. , 1996, Trends in biochemical sciences.
[65] K. Nikaido,et al. Liganded and Unliganded Receptors Interact with Equal Affinity with the Membrane Complex of Periplasmic Permeases, a Subfamily of Traffic ATPases* , 1996, The Journal of Biological Chemistry.
[66] Y. Koh,et al. Isolation of a novel paraquat-inducible (pqi) gene regulated by the soxRS locus in Escherichia coli , 1995, Journal of bacteriology.
[67] Manuel G. Claros,et al. TopPred II: an improved software for membrane protein structure predictions , 1994, Comput. Appl. Biosci..
[68] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[69] W. Saurin,et al. Bacterial binding protein‐dependent permeases: characterization of distinctive signatures for functionally related integral cytoplasmic membrane proteins , 1994, Molecular microbiology.
[70] W. Saurin,et al. Sequence relationships between integral inner membrane proteins of binding protein‐dependent transport systems: Evolution by recurrent gene duplications , 1994, Protein science : a publication of the Protein Society.
[71] R. Knights,et al. Cloning of an M. tuberculosis DNA fragment associated with entry and survival inside cells. , 1993, Science.
[72] M H Saier,et al. Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria , 1993, Microbiological reviews.
[73] S. Cole,et al. Nucleotide sequence of the first cosmid from the Mycobacterium leprae genome project: structure and function of the Rif‐Str regions , 1993, Molecular microbiology.
[74] A. Lupas,et al. Predicting coiled coils from protein sequences , 1991, Science.
[75] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[76] G. Ames,et al. Bacterial periplasmic permeases belong to a family of transport proteins operating from Escherichia coli to human: Traffic ATPases. , 1990, FEMS microbiology reviews.
[77] G. Ames,et al. Bacterial periplasmic permeases belong to a family of transport proteins operating from to human: Traffic ATPases , 1990 .
[78] M. Hofnung,et al. Sequence of gene malG in E. coli K12: homologies between integral membrane components from binding protein‐dependent transport systems. , 1985, The EMBO journal.
[79] J. Walker,et al. Distantly related sequences in the alpha‐ and beta‐subunits of ATP synthase, myosin, kinases and other ATP‐requiring enzymes and a common nucleotide binding fold. , 1982, The EMBO journal.
[80] R. Pajóna,et al. Computational identification of beta-barrel outer-membrane proteins in Mycobacterium tuberculosis predicted proteomes as putative vaccine candidates , 2006 .
[81] Owen White,et al. The TIGRFAMs database of protein families , 2003, Nucleic Acids Res..
[82] E. Dassa. PHYLOGENETIC AND FUNCTIONAL CLASSIFICATION OF ABC (ATP-BINDING CASSETTE) SYSTEMS**ABSCISSE, a database of ABC systems, which includes functional, sequence and structural information, is available on the internet at the following address: www.pasteur.fr/recherche/unites/pmtg/abc/index.html. , 2003 .
[83] G. Schoolnik,et al. Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: Insights into the phagosomal environment JOURNAL OF EXPERIMENTAL MEDICINE , 2003 .
[84] G. Winkelmann. Microbial transport systems , 2001 .
[85] William Saurin,et al. Getting In or Out: Early Segregation Between Importers and Exporters in the Evolution of ATP-Binding Cassette (ABC) Transporters , 1999, Journal of Molecular Evolution.
[86] M. Hofnung,et al. Phylogenetic analyses of the ATP-binding constituents of bacterial extracytoplasmic receptor-dependent ABC-type nutrient uptake permeases. , 1995, Research in microbiology.
[87] Charles Elkan,et al. Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer , 1994, ISMB.
[88] E. Stackebrandt,et al. The molecular phylogeny and systematics of the actinomycetes. , 1994, Annual review of microbiology.
[89] S. Holbrook,et al. Traffic ATPases: a superfamily of transport proteins operating from Escherichia coli to humans. , 1992, Advances in enzymology and related areas of molecular biology.
[90] M. Ginsberg,et al. Arginyl-glycyl-aspartic acid (RGD): a cell adhesion motif. , 1991, Trends in biochemical sciences.
[91] R. M. Kroppenstedt. Fatty acid and menaquinone analysis of actinomycetes and related organisms , 1985 .