SpecNet: A Spatial Network Algorithm that Generates a Wide Range of Specific Structures

Network measures are used to predict the behavior of different systems. To be able to investigate how various structures behave and interact we need a wide range of theoretical networks to explore. Both spatial and non-spatial methods exist for generating networks but they are limited in the ability of producing wide range of network structures. We extend an earlier version of a spatial spectral network algorithm to generate a large variety of networks across almost all the theoretical spectra of the following network measures: average clustering coefficient, degree assortativity, fragmentation index, and mean degree. We compare this extended spatial spectral network-generating algorithm with a non-spatial algorithm regarding their ability to create networks with different structures and network measures. The spatial spectral network-generating algorithm can generate networks over a much broader scale than the non-spatial and other known network algorithms. To exemplify the ability to regenerate real networks, we regenerate networks with structures similar to two real Swedish swine transport networks. Results show that the spatial algorithm is an appropriate model with correlation coefficients at 0.99. This novel algorithm can even create negative assortativity and managed to achieve assortativity values that spans over almost the entire theoretical range.

[1]  M. Newman,et al.  Why social networks are different from other types of networks. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

[2]  Marcus Kaiser,et al.  Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems , 2006, PLoS Comput. Biol..

[3]  Nina Håkansson,et al.  Generating Structure Specific Networks , 2010, Adv. Complex Syst..

[4]  Albert-László Barabási,et al.  Understanding individual human mobility patterns , 2008, Nature.

[5]  Aravind Srinivasan,et al.  Modelling disease outbreaks in realistic urban social networks , 2004, Nature.

[6]  Carlo Ratti,et al.  Does Urban Mobility Have a Daily Routine? Learning from the Aggregate Data of Mobile Networks , 2010 .

[7]  Marián Boguñá,et al.  Tuning clustering in random networks with arbitrary degree distributions. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

[8]  Markus Porto,et al.  Generation of arbitrarily two-point-correlated random networks. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.

[9]  C. Webb,et al.  Farm animal networks: unraveling the contact structure of the British sheep population. , 2005, Preventive veterinary medicine.

[10]  R. Pastor-Satorras,et al.  Generation of uncorrelated random scale-free networks. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

[11]  Y. Moreno,et al.  Epidemic outbreaks in complex heterogeneous networks , 2001, cond-mat/0107267.

[12]  Stanley Wasserman,et al.  Social Network Analysis: Methods and Applications , 1994, Structural analysis in the social sciences.

[13]  Dylan B. George,et al.  Using network properties to predict disease dynamics on human contact networks , 2011, Proceedings of the Royal Society B: Biological Sciences.

[14]  Bruce A. Reed,et al.  A Critical Point for Random Graphs with a Given Degree Sequence , 1995, Random Struct. Algorithms.

[15]  Hawoong Jeong,et al.  Modeling the Internet's large-scale topology , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[16]  David C. Bell,et al.  Centrality measures for disease transmission networks , 1999, Soc. Networks.

[17]  M. Keeling,et al.  Networks and epidemic models , 2005, Journal of The Royal Society Interface.

[18]  M. Keeling,et al.  The effects of local spatial structure on epidemiological invasions , 1999, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[19]  Michalis Faloutsos,et al.  On power-law relationships of the Internet topology , 1999, SIGCOMM '99.

[20]  Jennifer Badham,et al.  Parameterization of Keeling's network generation algorithm. , 2008, Theoretical population biology.

[21]  Zahid Asghar,et al.  Influence of Selected Formation Rules for Finite Population Networks with Fixed Macrostructures: Implications for Individual-Based Model of Infectious Diseases , 2007 .

[22]  Bruce A. Reed,et al.  The Size of the Giant Component of a Random Graph with a Given Degree Sequence , 1998, Combinatorics, Probability and Computing.

[23]  L. Meyers,et al.  When individual behaviour matters: homogeneous and network models in epidemiology , 2007, Journal of The Royal Society Interface.

[24]  Albert,et al.  Emergence of scaling in random networks , 1999, Science.

[25]  Edward A. Bender,et al.  The Asymptotic Number of Labeled Graphs with Given Degree Sequences , 1978, J. Comb. Theory A.

[26]  Jennifer Badham,et al.  A Spatial Approach to Network Generation for Three Properties: Degree Distribution, Clustering Coefficient and Degree Assortativity , 2010, J. Artif. Soc. Soc. Simul..

[27]  M. Keeling The implications of network structure for epidemic dynamics. , 2005, Theoretical population biology.

[28]  Mark D. F. Shirley,et al.  The impacts of network topology on disease spread , 2005 .

[29]  Mark E. J. Newman,et al.  The Structure and Function of Complex Networks , 2003, SIAM Rev..

[30]  Michael T. Gastner,et al.  The spatial structure of networks , 2006 .

[31]  Marc Barthelemy,et al.  Spatial Networks , 2010, Encyclopedia of Social Network Analysis and Mining.

[32]  R. Christley,et al.  Infection in social networks: using network analysis to identify high-risk individuals. , 2005, American journal of epidemiology.

[33]  Takao Asano An O(n log log n) Time Algorithm for Constructing a Graph of Maximum Connectivity with Prescribed Degrees , 1995, J. Comput. Syst. Sci..

[34]  Eric Renshaw,et al.  Spectral tests of randomness for spatial point patterns , 2001, Environmental and Ecological Statistics.

[35]  Duncan J. Watts,et al.  Collective dynamics of ‘small-world’ networks , 1998, Nature.

[36]  M E J Newman Assortative mixing in networks. , 2002, Physical review letters.

[37]  R. Christley,et al.  Network analysis of cattle movement in Great Britain. , 2005 .

[38]  Markus Porto,et al.  Generating random networks with given degree-degree correlations and degree-dependent clustering. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.

[39]  Jennifer Badham,et al.  The impact of network clustering and assortativity on epidemic behaviour. , 2010, Theoretical population biology.

[40]  Mark Newman,et al.  Networks: An Introduction , 2010 .