Computational Genomics of Noncoding RNA Genes

[1]  C. Burge,et al.  A computational analysis of sequence features involved in recognition of short introns , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[2]  J. Lobry,et al.  Relationships Between Genomic G+C Content, RNA Secondary Structures, and Optimal Growth Temperature in Prokaryotes , 1997, Journal of Molecular Evolution.

[3]  I-Min A. Dubchak,et al.  A computational approach to identify genes for functional RNAs in genomic sequences. , 2001, Nucleic acids research.

[4]  S. Eddy,et al.  Computational identification of noncoding RNAs in E. coli by comparative genomics , 2001, Current Biology.

[5]  J. Monod,et al.  Genetic regulatory mechanisms in the synthesis of proteins. , 1961, Journal of molecular biology.

[6]  AC Tose.  Cell , 1993, Cell.

[7]  M. Hentze,et al.  Finding the hairpin in the haystack: searching for RNA motifs. , 1995, Trends in genetics : TIG.

[8]  Durbin,et al.  Biological Sequence Analysis , 1998 .

[9]  H. Margalit,et al.  Novel small RNA-encoding genes in the intergenic regions of Escherichia coli , 2001, Current Biology.

[10]  Sean R. Eddy,et al.  Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids , 1998 .

[11]  S. Eddy.  Non–coding RNA genes and the modern RNA world , 2001, Nature Reviews Genetics.

[12]  R. Kelley,et al.  Noncoding RNA Genes in Dosage Compensation and Imprinting , 2000, Cell.

[13]  B. Ganem.  RNA world , 1987, Nature.

[14]  G. G. Stokes.  "J." , 1890, The New Yale Book of Quotations.

[15]  S. Altschul.  Amino acid substitution matrices from an information theoretic perspective , 1991, Journal of Molecular Biology.

[16]  G. L. Eliceiri.  Small nucleolar RNAs , 1999, Cellular and Molecular Life Sciences CMLS.

[17]  G. Storz,et al.  Small RNAs in Escherichia coli. , 1999, Trends in microbiology.

[18]  S. Eddy,et al.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.

[19]  Maciej Szymanski,et al.  The non-coding RNAs as riboregulators , 2001, Nucleic Acids Res..

[20]  J. Nemes,et al.  The SCA8 transcript is an antisense RNA to a brain-specific transcript encoding a novel actin-binding protein (KLHL1). , 2000, Human molecular genetics.

[21]  V. Ambros.  microRNAs Tiny Regulators with Great Potential , 2001, Cell.

[22]  G. Storz,et al.  Identification of novel small RNAs using comparative genomics and microarrays. , 2001, Genes & development.