The zebrafish reference genome sequence and its relationship to the human genome

Anton J. Enright | James D. Cooper | N. Carter | J. Harrow | S. Searle | M. Kay | T. Hubbard | Fengtang Yang | Katherine Auger | L. Matthews | S. Whitehead | W. Chow | J. Torrance | M. Dunn | G. Harden | Glen Threadgold | Jonathan M D Wood | J. Collins | P. Heath | G. Griffiths | S. Pelan | D. Grafham | K. Howe | J. Postlethwait | M. Westerfield | C. Clee | B. Mortimore | J. Rogers | C. Nüsslein-Volhard | L. Zon | M. Konantz | J. Barrett | S. Humphray | Z. Ning | C. Bird | J. Burton | K. McLay | S. Sims | J. Chi | M. Quail | K. Osoegawa | A. Enright | C. Langford | R. Andrews | N. Matthews | B. Zhu | D. Leongamornlert | H. R. Crollius | Sancha Martin | S. McLaren | R. Plasterk | R. Geisler | A. Hunt | C. Lloyd | J. Wallis | C. Churcher | K. Oliver | D. Saunders | B. Phillimore | Sharmin Begum | S. Schuster | M. Cáccamo | T. Eyre | I. Sealy | S. Trevanion | J. Vogel | S. White | Javier Herrero | C. Scott | D. Stemple | J. A. Guerra-Assunção | R. Banerjee | C. Lanz | Matthieu Muffato | J. Loveland | Deepa Manthravadi | G. Barker | E. Gray | P. Jong | J. Collins | A. Babbage | G. Clark | N. Corby | R. Hall | A. Kimberley | G. Laird | D. Lloyd | M. Mashreghi-mohammadi | H. Sehra | C. Skuce | D. Willey | Kenric Leung | S. Widaa | B. Fu | A. Rapp | Richard C. Clark | C. Torroja | Nigel Fosker | Matt Jones | M. Clark | Britt Kilian | S. Redmond | Christopher M. Dooley | P. Wray | A. Tracey | Camille Berthelot | S. Palmer | D. Barker | H. Beasley | P. Garner | J. Garnett | R. Glithero | C. Griffiths | S. Hammond | J. Harley | M. Humphries | J. Lovell | N. Sycamore | A. Tromans | Leonor T. Quintais | K. McLaren | C. Riddle | Lena Karotki | R. Koch | G. Rauch | Yi Zhou | Yong Gu | J. Yen | E. Langley | Sean F. Maguire | E. Kenyon | S. Donaldson | J. Almeida-King | Bob Plumb | Joy L. Davis | David Elliott | D. Ware | G. Kerry | Christopher N. Johnson | S. Clark | Michelle Smith | Philip Howden | Nicholas F. Barker | Christopher Stevens | K. Holt | G. Panagiotidis | C. Henderson | D. Gordon | Deborah Wright | C. Raisen | L. Dyer | Lauren Robertson | K. Ambridge | Sarah McGuire | Ruth Gilderthorp | S. Nichol | Jacqueline Brown | Clare Murnane | Lucy Barr | A. Ellington | M. Ellwood | Rebecca Woodmansey | R. Pandian | E. Harrison | Daniel Kelly | Ines Gehring | A. Berger | Zübeyde Ersan-Ürün | Cigdem Eser | Horst Geiger | Maria Geisler | A. Kirn | Judith Konantz | M. Oberländer | Silke Rudolph-Geiger | Mathias Teucke | G. Raddatz | Charles Lee | Jonathan M. D. Wood | R. Clark | C. Eser | Stuart McLaren | Romke Koch | Elliot Harrison | J. Wood | Gerd-Jörg Rauch | Darren Barker | Maria Geisler | Emma V. Gray | Stuart Mclaren

[1]  Matteo Pellegrini,et al.  A large-scale zebrafish gene knockout resource for the genome-wide study of gene function , 2013, Genome research.

[2]  Steven A. Harvey,et al.  A systematic genome-wide analysis of zebrafish protein-coding gene function , 2013, Nature.

[3]  Castañeda Chang,et al.  of the Zebrafish (Danio rerio) Infraorbital Bones. , 2013 .

[4]  Kenny Q. Ye,et al.  An integrated map of genetic variation from 1,092 human genomes , 2012, Nature.

[5]  S. Searle,et al.  Incorporating RNA-seq data into the zebrafish Ensembl genebuild , 2012, Genome research.

[6]  A. Amores,et al.  Multiple Sex-Associated Regions and a Putative Sex Chromosome in Zebrafish Revealed by RAD Mapping and Population Genomics , 2012, PloS one.

[7]  A. Reymond,et al.  KCTD13 is a major driver of mirrored neuroanatomical phenotypes of the 16p11.2 copy number variant , 2012, Nature.

[8]  A. Schier,et al.  CCDC103 mutations cause primary ciliary dyskinesia by disrupting assembly of ciliary dynein arms , 2012, Nature Genetics.

[9]  Christian Gilissen,et al.  Mutations in ISPD cause Walker-Warburg syndrome and defective glycosylation of α-dystroglycan , 2012, Nature Genetics.

[10]  John P. Ray,et al.  Host Genotype-Specific Therapies Can Optimize the Inflammatory Response to Mycobacterial Infections , 2012, Cell.

[11]  A. Amores,et al.  Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication , 2011, Genetics.

[12]  Kevin M. Bradley,et al.  An SNP-Based Linkage Map for Zebrafish Reveals Sex Determination Loci , 2011, G3: Genes | Genomes | Genetics.

[13]  Catherine A. Wilson,et al.  Roles of brca2 (fancd1) in Oocyte Nuclear Architecture, Gametogenesis, Gonad Tumors, and Genome Stability in Zebrafish , 2011, PLoS genetics.

[14]  Steven J. M. Jones,et al.  Circos: an information aesthetic for comparative genomics. , 2009, Genome research.

[15]  Albert J. Vilella,et al.  EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. , 2009, Genome research.

[16]  M. Cáccamo,et al.  Conservation and divergence of gene families encoding components of innate immune response systems in zebrafish , 2007, Genome Biology.

[17]  J. Postlethwait.  The zebrafish genome in context: ohnologs gone missing. , 2007, Journal of experimental zoology. Part B, Molecular and developmental evolution.

[18]  N. Carter,et al.  Definition of the zebrafish genome using flow cytometry and cytogenetic mapping , 2007, BMC Genomics.

[19]  Fumiko Ohta,et al.  The medaka draft genome and insights into vertebrate genome evolution , 2007, Nature.

[20]  D. Stainier,et al.  Mesodermal Wnt2b signalling positively regulates liver specification , 2006, Nature.

[21]  Charles E. Chapple,et al.  Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype , 2004, Nature.

[22]  B. Birren,et al.  Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae , 2004, Nature.

[23]  Angel Amores,et al.  Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish. , 2003, Genome research.

[24]  E. Gornung,et al.  Classical and molecular cytogenetics of the zebrafish, Danio rerio (Cyprinidae, Cypriniformes): an overview , 2004, Genetica.

[25]  K. Wolfe.  Robustness—it's not where you think it is , 2000, Nature Genetics.

[26]  A. Meyer,et al.  Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions. , 1999, Current opinion in cell biology.

[27]  W. Talbot,et al.  The EGF-CFC Protein One-Eyed Pinhead Is Essential for Nodal Signaling , 1999, Cell.

[28]  D A Kane,et al.  The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. , 1996, Development.

[29]  A. Schier,et al.  A genetic screen for mutations affecting embryogenesis in zebrafish. , 1996, Development.

[30]  J. Postlethwait,et al.  A homeobox gene essential for zebrafish notochord development , 1995, Nature.

[31]  G. Streisinger,et al.  Production of clones of homozygous diploid zebra fish (Brachydanio rerio) , 1981, Nature.