Integrative analysis of ATAC-seq and RNA-seq for cells infected by human T-cell leukemia virus type 1
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M. Matsuoka | A. Tanaka | Hiromitsu Tanaka | N. Takenouchi | Chiho Onishi | Ki‐Ryang Koh | Yasuhiro Ishitsuka | Hiroki Ohta | Akihiro Fujimoto | Jun-ichirou Yasunaga | Masanori Nakagawa | Azusa Tanaka
[1] C. Bangham. HTLV-1 persistence and the oncogenesis of adult T cell leukemia/lymphoma. , 2023, Blood.
[2] Hiroki Ohta,et al. Systematic clustering algorithm for chromatin accessibility data and its application to hematopoietic cells , 2020, PLoS Comput. Biol..
[3] Henry W. Long,et al. Chromatin accessibility promotes hematopoietic and leukemia stem cell activity , 2020, Nature Communications.
[4] Mauro A. A. Castro,et al. The chromatin accessibility landscape of primary human cancers , 2018, Science.
[5] R. Staversky,et al. The Chemokine CCL3 Regulates Myeloid Differentiation and Hematopoietic Stem Cell Numbers , 2018, Scientific Reports.
[6] Jianxin You,et al. Molecular mechanisms of viral oncogenesis in humans , 2018, Nature Reviews Microbiology.
[7] K. Uchimaru,et al. HTLV-1-Mediated Epigenetic Pathway to Adult T-Cell Leukemia–Lymphoma , 2018, Front. Microbiol..
[8] Marcel H. Schulz,et al. Identification of transcription factor binding sites using ATAC-seq , 2018, bioRxiv.
[9] M. Matsuoka,et al. Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo , 2017, PLoS pathogens.
[10] Howard Y. Chang,et al. Chromatin Accessibility Landscape of Cutaneous T Cell Lymphoma and Dynamic Response to HDAC Inhibitors. , 2017, Cancer cell.
[11] H. Yoshiji,et al. Genome-Wide Association Study Identifies TLL1 Variant Associated With Development of Hepatocellular Carcinoma After Eradication of Hepatitis C Virus Infection. , 2017, Gastroenterology.
[12] Toshiki Watanabe. Adult T-cell leukemia: molecular basis for clonal expansion and transformation of HTLV-1-infected T cells. , 2017, Blood.
[13] Howard Y. Chang,et al. Lineage-specific and single cell chromatin accessibility charts human hematopoiesis and leukemia evolution , 2016, Nature Genetics.
[14] Satoru Miyano,et al. Aberrant PD-L1 expression through 3′-UTR disruption in multiple cancers , 2016, Nature.
[15] S. Ogawa,et al. [Genetic landscape of adult T-cell leukemia/lymphoma]. , 2016, [Rinsho ketsueki] The Japanese journal of clinical hematology.
[16] M. Matsuoka,et al. Multifaceted functions and roles of HBZ in HTLV-1 pathogenesis , 2016, Retrovirology.
[17] Howard Y. Chang,et al. Leukemia-Associated Cohesin Mutants Dominantly Enforce Stem Cell Programs and Impair Human Hematopoietic Progenitor Differentiation. , 2015, Cell stem cell.
[18] H. Aburatani,et al. Integrated molecular analysis of adult T cell leukemia/lymphoma , 2015, Nature Genetics.
[19] M. Matsuoka,et al. HTLV-1 bZIP Factor RNA and Protein Impart Distinct Functions on T-cell Proliferation and Survival. , 2015, Cancer research.
[20] K. Nakano,et al. Epigenetic deregulation of Ellis Van Creveld confers robust Hedgehog signaling in adult T-cell leukemia , 2014, Cancer science.
[21] Howard Y. Chang,et al. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position , 2013, Nature Methods.
[22] Stephen P. Luby,et al. A Strategy To Estimate Unknown Viral Diversity in Mammals , 2013, mBio.
[23] E. Chen,et al. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool , 2013, BMC Bioinformatics.
[24] Huanhuan Li,et al. MicroRNA-155 Modulates Treg and Th17 Cells Differentiation and Th17 Cell Function by Targeting SOCS1 , 2012, PloS one.
[25] A. Gessain,et al. Epidemiological Aspects and World Distribution of HTLV-1 Infection , 2012, Front. Microbio..
[26] Nathan C. Sheffield,et al. The accessible chromatin landscape of the human genome , 2012, Nature.
[27] Davis J. McCarthy,et al. Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation , 2012, Nucleic acids research.
[28] S. Henikoff,et al. Epigenome characterization at single base-pair resolution , 2011, Proceedings of the National Academy of Sciences.
[29] M. Matsuoka,et al. HTLV-1 bZIP factor enhances TGF-β signaling through p300 coactivator. , 2011, Blood.
[30] S. Wilkes,et al. CD71 is Selectively and Ubiquitously Expressed at High Levels in Erythroid Precursors of All Maturation Stages: A Comparative Immunochemical Study With Glycophorin A and Hemoglobin A , 2011, The American journal of surgical pathology.
[31] G. Pinkus,et al. CD71 (transferrin receptor): an effective marker for erythroid precursors in bone marrow biopsy specimens. , 2010, American journal of clinical pathology.
[32] S. Hopkinson,et al. Faculty Opinions recommendation of Roles of epithelial cell-derived periostin in TGF-beta activation, collagen production, and collagen gel elasticity in asthma. , 2010 .
[33] C. Glass,et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.
[34] M. Robinson,et al. A scaling normalization method for differential expression analysis of RNA-seq data , 2010, Genome Biology.
[35] Davis J. McCarthy,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[36] Chen Dong,et al. CCR6 Regulates the Migration of Inflammatory and Regulatory T Cells1 , 2008, The Journal of Immunology.
[37] Clifford A. Meyer,et al. Model-based Analysis of ChIP-Seq (MACS) , 2008, Genome Biology.
[38] K. Kaestner,et al. The Kruppel‐like factor KLF4 is a critical regulator of monocyte differentiation , 2007, The EMBO journal.
[39] Kuan-Teh Jeang,et al. Human T-cell leukaemia virus type 1 (HTLV-1) infectivity and cellular transformation , 2007, Nature Reviews Cancer.
[40] D. Greenspan,et al. BMP1 controls TGFβ1 activation via cleavage of latent TGFβ-binding protein , 2006, The Journal of cell biology.
[41] Jun-ichirou Yasunaga,et al. HTLV-I basic leucine zipper factor gene mRNA supports proliferation of adult T cell leukemia cells. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[42] Yoshinori Murakami,et al. Overexpression of a cell adhesion molecule, TSLC1, as a possible molecular marker for acute-type adult T-cell leukemia. , 2004, Blood.
[43] J. Isaacs,et al. Real-time PCR based on SYBR-Green I fluorescence: An alternative to the TaqMan assay for a relative quantification of gene rearrangements, gene amplifications and micro gene deletions , 2003 .
[44] B. Hogan,et al. The mammalian Tolloid-like 1 gene, Tll1, is necessary for normal septation and positioning of the heart. , 1999, Development.
[45] J. Billadello,et al. Multiple transforming growth factor-beta-inducible elements regulate expression of the plasminogen activator inhibitor type-1 gene in Hep G2 cells. , 1991, The Journal of biological chemistry.
[46] P Rudge,et al. In vivo cellular tropism of human T-cell leukemia virus type 1 , 1990, Journal of virology.
[47] M. Matsuoka,et al. HTLV-1 bZIP factor suppresses apoptosis by attenuating the function of FoxO3a and altering its localization. , 2014, Cancer research.
[48] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[49] Retrovirology BioMed Central , 2008 .