Integrating cross-scale analysis in the spatial and temporal domains for classification of behavioral movement

Since various behavioral movement patterns are likely to be valid within differ- ent, unique ranges of spatial and temporal scales (e.g., instantaneous, diurnal, or seasonal) with the corresponding spatial extents, a cross-scale approach is needed for accurate clas- sification of behaviors expressed in movement. Here, we introduce a methodology for the characterization and classification of behavioral movement data that relies on comput- ing and analyzing movement features jointly in both the spatial and temporal domains. The proposed methodology consists of three stages. In the first stage, focusing on the spatial domain, the underlying movement space is partitioned into several zonings that correspond to different spatial scales, and features related to movement are computed for each partitioning level. In the second stage, concentrating on the temporal domain, several movement parameters are computed from trajectories across a series of temporal windows of increasing sizes, yielding another set of input features for the classification. For both the spatial and the temporal domains, the "reliable scale" is determined by an automated procedure. This is the scale at which the best classification accuracy is achieved, using only spatial or temporal input features, respectively. The third stage takes the measures from the spatial and temporal domains of movement, computed at the corresponding reliable

[1]  G. Elmer,et al.  Texture of locomotor path: a replicable characterization of a complex behavioral phenotype , 2005, Genes, brain, and behavior.

[2]  M. Geyer,et al.  A temporal and spatial scaling hypothesis for the behavioral effects of psychostimulants , 2005, Psychopharmacology.

[3]  David W. S. Wong The Modifiable Areal Unit Problem (MAUP) , 2004 .

[4]  Alexander J. Smola,et al.  Learning with kernels , 1998 .

[5]  Siddharth Gaikwad,et al.  Measuring behavioral and endocrine responses to novelty stress in adult zebrafish , 2010, Nature Protocols.

[6]  Claire M Postlethwaite,et al.  A new multi-scale measure for analysing animal movement data. , 2013, Journal of theoretical biology.

[7]  M. Kolehmainen,et al.  Cow behaviour pattern recognition using a three-dimensional accelerometer and support vector machines , 2009 .

[8]  Jihoon Yang,et al.  Feature Subset Selection Using a Genetic Algorithm , 1998, IEEE Intell. Syst..

[9]  Evan J. Kyzar,et al.  Zebrafish models to study drug abuse-related phenotypes , 2011, Reviews in the neurosciences.

[10]  Cheng-Lung Huang,et al.  A GA-based feature selection and parameters optimizationfor support vector machines , 2006, Expert Syst. Appl..

[11]  Niamh K. Shortt Regionalization/Zoning Systems , 2009 .

[12]  P. Torrens,et al.  Building Agent‐Based Walking Models by Machine‐Learning on Diverse Databases of Space‐Time Trajectory Samples , 2011 .

[13]  R Begg,et al.  A machine learning approach for automated recognition of movement patterns using basic, kinetic and kinematic gait data. , 2005, Journal of biomechanics.

[14]  E. Levin Zebrafish assessment of cognitive improvement and anxiolysis: filling the gap between in vitro and rodent models for drug development , 2011, Reviews in the neurosciences.

[15]  Allan V. Kalueff,et al.  Understanding behavioral and physiological phenotypes of stress and anxiety in zebrafish , 2009, Behavioural Brain Research.

[16]  R. Macarthur The Problem of Pattern and Scale in Ecology: The Robert H. MacArthur Award Lecture , 2005 .

[17]  Michael F. Goodchild,et al.  Scale in GIS: An overview , 2011 .

[18]  Andreas Zell,et al.  Automated classification of the behavior of rats in the forced swimming test with support vector machines , 2008, Neural Networks.

[19]  Isabelle Guyon,et al.  An Introduction to Variable and Feature Selection , 2003, J. Mach. Learn. Res..

[20]  L. Zon,et al.  In vivo drug discovery in the zebrafish , 2005, Nature Reviews Drug Discovery.

[21]  Tieniu Tan,et al.  A hierarchical self-organizing approach for learning the patterns of motion trajectories , 2004, IEEE Trans. Neural Networks.

[22]  Petros Koumoutsakos,et al.  A novel supervised trajectory segmentation algorithm identifies distinct types of human adenovirus motion in host cells. , 2007, Journal of structural biology.

[23]  Robert Weibel,et al.  Revealing the physics of movement: Comparing the similarity of movement characteristics of different types of moving objects , 2009, Comput. Environ. Urban Syst..

[24]  Patrick V. Russo,et al.  Multivariate assessment of locomotor behavior: Pharmacological and behavioral analyses , 1986, Pharmacology Biochemistry and Behavior.

[25]  William L Jorgensen,et al.  Challenges for academic drug discovery. , 2012, Angewandte Chemie.

[26]  T. Guilford,et al.  Migration and stopover in a small pelagic seabird, the Manx shearwater Puffinus puffinus: insights from machine learning , 2009, Proceedings of the Royal Society B: Biological Sciences.

[27]  Neri Kafkafi,et al.  A Data Mining Approach to In Vivo Classification of Psychopharmacological Drugs , 2009, Neuropsychopharmacology.

[28]  Robert Weibel,et al.  Towards a taxonomy of movement patterns , 2008, Inf. Vis..

[29]  Ivo F. Sbalzarini,et al.  Machine Learning for Biological Trajectory Classification Applications , 2002 .

[30]  Siddharth Gaikwad,et al.  Characterization of behavioral and endocrine effects of LSD on zebrafish , 2010, Behavioural Brain Research.

[31]  Alastair Franke,et al.  Analysis of movements and behavior of caribou (Rangifer tarandus) using hidden Markov models , 2004 .

[32]  Evan J. Kyzar,et al.  Three-Dimensional Neurophenotyping of Adult Zebrafish Behavior , 2011, PloS one.

[33]  Jean Carletta,et al.  Assessing Agreement on Classification Tasks: The Kappa Statistic , 1996, CL.

[34]  Martin P. Paulus,et al.  Three independent factors characterize spontaneous rat motor activity , 1993, Behavioural Brain Research.

[35]  Ross Purves,et al.  How fast is a cow? Cross‐Scale Analysis of Movement Data , 2011, Trans. GIS.

[36]  Alain Rakotomamonjy,et al.  Variable Selection Using SVM-based Criteria , 2003, J. Mach. Learn. Res..

[37]  E. Revilla,et al.  A movement ecology paradigm for unifying organismal movement research , 2008, Proceedings of the National Academy of Sciences.

[38]  D. Haydon,et al.  Multiple movement modes by large herbivores at multiple spatiotemporal scales , 2008, Proceedings of the National Academy of Sciences.