Environmentally coupled hydrogen tunneling

Many biological C-H activation reactions exhibit nonclassical kinetic isotope effects (KIEs). These nonclassical KIEs are too large (kH/kD > 7) and/or exhibit unusual temperature dependence such that the Arrhenius prefactor KIEs (AH/AD) fall outside of the semiclassical range near unity. The focus of this minireview is to discuss such KIEs within the context of the environmentally coupled hydrogen tunneling model. Full tunneling models of hydrogen transfer assume that protein or solvent fluctuations generate a reactive configuration along the classical, heavy-atom coordinate, from which the hydrogen transfers via nuclear tunneling. Environmentally coupled tunneling also invokes an environmental vibration (gating) that modulates the tunneling barrier, leading to a temperature-dependent KIE. These properties directly link enzyme fluctuations to the reaction coordinate for hydrogen transfer, making a quantum view of hydrogen transfer necessarily a dynamic view of catalysis. The environmentally coupled hydrogen tunneling model leads to a range of magnitudes of KIEs, which reflect the tunneling barrier, and a range of AH/AD values, which reflect the extent to which gating modulates hydrogen transfer. Gating is the primary determinant of the temperature dependence of the KIE within this model, providing insight into the importance of this motion in modulating the reaction coordinate. The potential use of variable temperature KIEs as a direct probe of coupling between environmental dynamics and the reaction coordinate is described. The evolution from application of a tunneling correction to a full tunneling model in enzymatic H transfer reactions is discussed in the context of a thermophilic alcohol dehydrogenase and soybean lipoxygenase-1.

[1]  J. Klinman,et al.  Protein Flexibility Correlates with Degree of Hydrogen Tunneling in Thermophilic and Mesophilic Alcohol Dehydrogenases , 2000 .

[2]  J. Klinman,et al.  Extremely Large Isotope Effects in the Soybean Lipoxygenase-Linoleic Acid Reaction , 1994 .

[3]  J. Klinman,et al.  Unmasking of hydrogen tunneling in the horse liver alcohol dehydrogenase reaction by site-directed mutagenesis. , 1993, Biochemistry.

[4]  C. Brooks,et al.  Protein Dynamics in Enzymatic Catalysis: Exploration of Dihydrofolate Reductase , 2000 .

[5]  J. Hynes,et al.  Curve Crossing Formulation for Proton Transfer Reactions in Solution , 1996 .

[6]  M. Stern,et al.  Arrhenius preexponential factors for primary hydrogen kinetic isotope effects , 1972 .

[7]  J. Klinman,et al.  Hydrogen tunneling in the flavoenzyme monoamine oxidase B. , 1994, Biochemistry.

[8]  W. Saunders Calculations of isotope effects in elimination reactions: new experimental criteria for tunneling in slow proton transfers , 1985 .

[9]  R. Marcus,et al.  Electron transfers in chemistry and biology , 1985 .

[10]  N S Scrutton,et al.  Enzyme catalysis: over-the-barrier or through-the-barrier? , 2000, Trends in biochemical sciences.

[11]  W. Bialek,et al.  Vibrationally enhanced tunneling as a mechanism for enzymatic hydrogen transfer. , 1992, Biophysical journal.

[12]  J. Klinman,et al.  Nature of hydrogen transfer in soybean lipoxygenase 1: separation of primary and secondary isotope effects. , 1999, Biochemistry.

[13]  J. Clarke,et al.  Hydrogen exchange and protein folding. , 1998, Current opinion in structural biology.

[14]  J. Hynes,et al.  Dynamical theory of proton tunneling transfer rates in solution: general formulation , 1993 .

[15]  Sangyoub Lee,et al.  A DYNAMICAL THEORY OF NONADIABATIC PROTON AND HYDROGEN ATOM TRANSFER REACTION RATES IN SOLUTION , 1989 .

[16]  M. Glickman,et al.  Reduction of Ferric Iron Could Drive Hydrogen Tunneling in Lipoxygenase Catalysis: Implications for Enzymatic and Chemical Mechanisms , 1997 .

[17]  C. Grissom,et al.  Unusually large deuterium isotope effect in soybean lipoxygenase is not caused by a magnetic isotope effect , 1994 .

[18]  J D Lipscomb,et al.  Large kinetic isotope effects in methane oxidation catalyzed by methane monooxygenase: evidence for C-H bond cleavage in a reaction cycle intermediate. , 1996, Biochemistry.

[19]  M. Sutcliffe,et al.  New insights into enzyme catalysis. Ground state tunnelling driven by protein dynamics. , 1999, European journal of biochemistry.

[20]  G. Strambini,et al.  Phosphorescence lifetime of tryptophan in proteins. , 1995, Biochemistry.

[21]  C. J. Murray,et al.  Hydrogen tunneling in enzyme reactions. , 1989, Science.

[22]  J. Klinman,et al.  Evidence that both protium and deuterium undergo significant tunneling in the reaction catalyzed by bovine serum amine oxidase. , 1989, Biochemistry.

[23]  Amnon Kohen,et al.  Enzyme Catalysis: Beyond Classical Paradigms† , 1998 .

[24]  M. Sutcliffe,et al.  Enzymatic H-transfer requires vibration-driven extreme tunneling. , 1999, Biochemistry.

[25]  Arieh Warshel,et al.  Energetics and Dynamics of Enzymatic Reactions , 2001 .

[26]  S. Schwartz,et al.  Activated chemistry in the presence of a strongly symmetrically coupled vibration , 1998 .

[27]  S. Schwartz,et al.  Nonadiabatic effects in a method that combines classical and quantum mechanics , 1996 .

[28]  S. Hammes-Schiffer,et al.  Theoretical perspectives on proton-coupled electron transfer reactions. , 2001, Accounts of chemical research.

[29]  J. Ulstrup,et al.  Proton and hydrogen atom tunnelling in hydrolytic and redox enzyme catalysis , 1999 .

[30]  M. Stone,et al.  NMR relaxation studies of the role of conformational entropy in protein stability and ligand binding. , 2001, Accounts of chemical research.

[31]  G. Fabriàs,et al.  Is Hydrogen Tunneling Involved in AcylCoA Desaturase Reactions? The Case of a Δ9 Desaturase That Transforms (E)‐11‐Tetradecenoic Acid into (Z,E)‐9,11‐Tetradecadienoic Acid , 2000 .

[32]  D. Borgis,et al.  Nonadiabatic proton transfer reaction rates in solution: a semiclassical microscopic formalism , 1990 .

[33]  T. Sosnick,et al.  Hydrogen exchange: The modern legacy of Linderstrøm‐Lang , 1997, Protein science : a publication of the Protein Society.

[34]  J. W. Whittaker,et al.  Kinetic isotope effects as probes of the mechanism of galactose oxidase. , 1998, Biochemistry.

[35]  Amnon Kohen,et al.  Enzyme dynamics and hydrogen tunnelling in a thermophilic alcohol dehydrogenase , 1999, Nature.

[36]  J. Dawson,et al.  Heme-Containing Oxygenases. , 1996, Chemical reviews.

[37]  S. Schwartz,et al.  Internal Enzyme Motions as a Source of Catalytic Activity: Rate-Promoting Vibrations and Hydrogen Tunneling , 2001 .

[38]  Yongho Kim,et al.  The experimental manifestations of corner-cutting tunneling , 1992 .

[39]  T. Holman,et al.  Large Competitive Kinetic Isotope Effects in Human 15-Lipoxygenase Catalysis Measured by a Novel HPLC Method , 1999 .

[40]  J. Klinman,et al.  Experimental Evidence for Extensive Tunneling of Hydrogen in the Lipoxygenase Reaction: Implications for Enzyme Catalysis , 1996 .

[41]  E. Goldsmith,et al.  Changes in protein conformational mobility upon activation of extracellular regulated protein kinase-2 as detected by hydrogen exchange. , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[42]  S. Benkovic,et al.  Chemical basis for enzyme catalysis. , 2000, Biochemistry.

[43]  Judith P Klinman,et al.  Temperature-dependent isotope effects in soybean lipoxygenase-1: correlating hydrogen tunneling with protein dynamics. , 2002, Journal of the American Chemical Society.

[44]  J. Klinman,et al.  Nature of rate-limiting steps in the soybean lipoxygenase-1 reaction. , 1995, Biochemistry.

[45]  J. Klinman,et al.  Lipoxygenase reaction mechanism: demonstration that hydrogen abstraction from substrate precedes dioxygen binding during catalytic turnover. , 1996, Biochemistry.

[46]  Z Otwinowski,et al.  Crystal structure of soybean lipoxygenase L-1 at 1.4 A resolution. , 1996, Biochemistry.

[47]  Joshua S. Mincer,et al.  Identification of a protein-promoting vibration in the reaction catalyzed by horse liver alcohol dehydrogenase. , 2002, Journal of the American Chemical Society.

[48]  L Mayne,et al.  Mechanisms and uses of hydrogen exchange. , 1996, Current opinion in structural biology.

[49]  R. P. Bell,et al.  The tunnel effect in chemistry , 1959 .

[50]  S. Schwartz,et al.  Large kinetic isotope effects in enzymatic proton transfer and the role of substrate oscillations. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[51]  J. Kraut,et al.  How do enzymes work? , 1988, Science.

[52]  F. Westheimer The Magnitude of the Primary Kinetic Isotope Effect for Compounds of Hydrogen and Deuterium. , 1961 .