Convergence analysis of some multiobjective evolutionary algorithms when discovering motifs

An important issue in multiobjective optimization is the study of the convergence speed of algorithms. An optimization problem must be defined as simple as possible to minimize the computational cost required to solve it. In this work, we study the convergence speed of seven multiobjective evolutionary algorithms: DEPT, MO-VNS, MOABC, MO-GSA, MO-FA, NSGA-II, and SPEA2; when solving an important biological problem: the motif discovery problem. We have used twelve instances of four different organisms as benchmark, analyzing the number of fitness function evaluations required by each algorithm to achieve reasonable quality solutions. We have used the hypervolume indicator to evaluate the solutions discovered by each algorithm, measuring its quality every 100 evaluations. This methodology also allows us to study the hit rates of the algorithms over 30 independent runs. Moreover, we have made a deeper study in the more complex instance of each organism. In this study, we observe the increase of the archive (number of non-dominated solutions) and the spread of the Pareto fronts obtained by the algorithm in the median execution. As we will see, our study reveals that DEPT, MOABC, and MO-FA provide the best convergence speeds and the highest hit rates.