Hierarchical binding of the TodT response regulator to its multiple recognition sites at the tod pathway operon promoter.

[1]  J. Ramos,et al.  Bacterial sensor kinase TodS interacts with agonistic and antagonistic signals , 2007, Proceedings of the National Academy of Sciences.

[2]  Y. Fujita,et al.  Dual Regulation of the Bacillus subtilis Regulon Comprising the lmrAB and yxaGH Operons and yxaF Gene by Two Transcriptional Repressors, LmrA and YxaF, in Response to Flavonoids , 2007, Journal of bacteriology.

[3]  T. D. Schneider,et al.  Anatomy of Escherichia coli σ70 promoters , 2006, Nucleic acids research.

[4]  T. Mascher,et al.  Stimulus Perception in Bacterial Signal-Transducing Histidine Kinases , 2006, Microbiology and Molecular Biology Reviews.

[5]  Michael Y. Galperin,et al.  Sentra: a database of signal transduction proteins for comparative genome analysis , 2006, Nucleic Acids Res..

[6]  F. M. Hulett,et al.  Cys303 in the Histidine Kinase PhoR Is Crucial for the Phosphotransfer Reaction in the PhoPR Two-Component System in Bacillus subtilis , 2006, Journal of bacteriology.

[7]  R. Hakenbeck,et al.  The Two-Component Regulatory System TCS08 Is Involved in Cellobiose Metabolism of Streptococcus pneumoniae R6 , 2006, Journal of bacteriology.

[8]  M. Kivisaar,et al.  The ColRS Two-Component System Regulates Membrane Functions and Protects Pseudomonas putida against Phenol , 2006, Journal of bacteriology.

[9]  India G. Hook-Barnard,et al.  Escherichia coli RNA Polymerase Recognition of a σ70-Dependent Promoter Requiring a −35 DNA Element and an Extended −10 TGn Motif , 2006, Journal of bacteriology.

[10]  Arun K. Chatterjee,et al.  Erwinia carotovora Subspecies Produce Duplicate Variants of ExpR, LuxR Homologs That Activate rsmA Transcription but Differ in Their Interactions with N-Acylhomoserine Lactone Signals , 2006, Journal of bacteriology.

[11]  M. Inouye,et al.  Transcription Regulation of ompF and ompC by a Single Transcription Factor, OmpR* , 2006, Journal of Biological Chemistry.

[12]  R. Bourret Census of Prokaryotic Senses , 2006, Journal of bacteriology.

[13]  Michael Y. Galperin Structural Classification of Bacterial Response Regulators: Diversity of Output Domains and Domain Combinations , 2006, Journal of bacteriology.

[14]  Michelle D. Brazas,et al.  Contribution of the PhoP-PhoQ and PmrA-PmrB Two-Component Regulatory Systems to Mg2+-Induced Gene Regulation in Pseudomonas aeruginosa , 2006, Journal of bacteriology.

[15]  J. Ramos,et al.  The TodS-TodT two-component regulatory system recognizes a wide range of effectors and works with DNA-bending proteins. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[16]  T. Donohue,et al.  Mutational analysis of the C-terminal domain of the Rhodobacter sphaeroides response regulator PrrA. , 2005, Microbiology.

[17]  V. Di Stefano,et al.  Dual Role of Response Regulator StyR in Styrene Catabolism Regulation , 2005, Applied and Environmental Microbiology.

[18]  M. Bolognesi,et al.  An active-like structure in the unphosphorylated StyR response regulator suggests a phosphorylation- dependent allosteric activation mechanism. , 2005, Structure.

[19]  J. Ramos,et al.  The Multidrug Efflux Regulator TtgV Recognizes a Wide Range of Structurally Different Effectors in Solution and Complexed with Target DNA , 2005, Journal of Biological Chemistry.

[20]  Jan Roelof van der Meer,et al.  Bacterial Transcriptional Regulators for Degradation Pathways of Aromatic Compounds , 2004, Microbiology and Molecular Biology Reviews.

[21]  C. Bauer,et al.  RegB/RegA, a Highly Conserved Redox-Responding Global Two-Component Regulatory System , 2004, Microbiology and Molecular Biology Reviews.

[22]  M. Urbanowski,et al.  The Quorum Sensing Negative Regulators EsaR and ExpREcc, Homologues within the LuxR Family, Retain the Ability To Function as Activators of Transcription , 2003, Journal of bacteriology.

[23]  E. Groisman,et al.  Making informed decisions: regulatory interactions between two-component systems. , 2003, Trends in microbiology.

[24]  J. Ramos,et al.  Comparative genomic analysis of solvent extrusion pumps in Pseudomonas strains exhibiting different degrees of solvent tolerance , 2003, Extremophiles.

[25]  P. Ascenzi,et al.  Styrene-catabolism regulation in Pseudomonas fluorescens ST: phosphorylation of StyR induces dimerization and cooperative DNA-binding. , 2003, Biochemical and biophysical research communications.

[26]  C. Birck,et al.  The Crystal Structure of the Phosphorylation Domain in PhoP Reveals a Functional Tandem Association Mediated by an Asymmetric Interface , 2003, Journal of bacteriology.

[27]  L. Kenney,et al.  Interdomain Linkers of Homologous Response Regulators Determine Their Mechanism of Action , 2003, Journal of bacteriology.

[28]  J. Ramos,et al.  Cross-Regulation between a Novel Two-Component Signal Transduction System for Catabolism of Toluene in Pseudomonas mendocina and the TodST System from Pseudomonas putida , 2002, Journal of bacteriology.

[29]  Gary Parkinson,et al.  Structural Basis of Transcription Activation: The CAP-αCTD-DNA Complex , 2002, Science.

[30]  M. Solà,et al.  Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator. , 2002, Structure.

[31]  M J Todd,et al.  Enzyme kinetics determined using calorimetry: a general assay for enzyme activity? , 2001, Analytical biochemistry.

[32]  J. Ramos,et al.  Responses of Gram-negative bacteria to certain environmental stressors. , 2001, Current opinion in microbiology.

[33]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[34]  Brian F. Volkman,et al.  Structure of a transiently phosphorylated switch in bacterial signal transduction , 2000, Nature.

[35]  R. Ebright,et al.  Transcription activation by catabolite activator protein (CAP). , 1999, Journal of molecular biology.

[36]  J. Ramos,et al.  Toluene metabolism by the solvent-tolerant Pseudomonas putida DOT-T1 strain, and its role in solvent impermeabilization. , 1999, Gene.

[37]  J. Houghton,et al.  PcaR‐mediated activation and repression of pca genes from Pseudomonas putida are propagated by its binding to both the −35 and the −10 promoter elements , 1999, Molecular microbiology.

[38]  J. Ramos,et al.  Critical Nucleotides in the Upstream Region of the XylS-dependent TOL meta-Cleavage Pathway Operon Promoter as Deduced from Analysis of Mutants* , 1999, The Journal of Biological Chemistry.

[39]  R. Ebright,et al.  Orientation of OmpR monomers within an OmpR:DNA complex determined by DNA affinity cleaving. , 1999, Journal of molecular biology.

[40]  M. Inouye,et al.  Hierarchical and co‐operative binding of OmpR to a fusion construct containing the ompC and ompF upstream regulatory sequences of Escherichia coli , 1998, Genes to cells : devoted to molecular & cellular mechanisms.

[41]  S. Busby,et al.  Positive activation of gene expression. , 1998, Current opinion in microbiology.

[42]  A. Segura,et al.  PcaU, a Transcriptional Activator of Genes for Protocatechuate Utilization in Acinetobacter , 1998, Journal of bacteriology.

[43]  S. Busby,et al.  Region 2.5 of the Escherichia coli RNA polymerase σ70 subunit is responsible for the recognition of the ‘extended −10’ motif at promoters , 1997, The EMBO journal.

[44]  R Brousseau,et al.  A bacterial basic region leucine zipper histidine kinase regulating toluene degradation. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[45]  Phoebe A Rice,et al.  Crystal Structure of an IHF-DNA Complex: A Protein-Induced DNA U-Turn , 1996, Cell.

[46]  M. Inouye,et al.  Tandem Binding of Six OmpR Proteins to the ompF Upstream Regulatory Sequence of Escherichia coli(*) , 1995, The Journal of Biological Chemistry.

[47]  J. Ramos,et al.  Isolation and expansion of the catabolic potential of a Pseudomonas putida strain able to grow in the presence of high concentrations of aromatic hydrocarbons , 1995, Journal of bacteriology.

[48]  A. Kumar,et al.  The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription at an "extended minus 10" promoter. , 1993, Journal of molecular biology.

[49]  J. Collado-Vides,et al.  Control site location and transcriptional regulation in Escherichia coli. , 1991, Microbiological reviews.

[50]  D. Gibson,et al.  Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli. , 1989, The Journal of biological chemistry.

[51]  T. Mizuno,et al.  Phosphorylation of a bacterial activator protein, OmpR, by a protein kinase, EnvZ, results in stimulation of its DNA-binding ability. , 1989, Journal of biochemistry.

[52]  E. Raleigh,et al.  Genetic and physical mapping of the mcrA (rglA) and mcrB (rglB) loci of Escherichia coli K-12. , 1989, Genetics.

[53]  J F Brandts,et al.  Rapid measurement of binding constants and heats of binding using a new titration calorimeter. , 1989, Analytical biochemistry.

[54]  M. Rosenberg,et al.  Constitutive function of a positively regulated promoter reveals new sequences essential for activity. , 1987, The Journal of biological chemistry.

[55]  F. Ausubel,et al.  Two-component regulatory systems responsive to environmental stimuli share strongly conserved domains with the nitrogen assimilation regulatory genes ntrB and ntrC. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[56]  D. K. Hawley,et al.  Compilation and analysis of Escherichia coli promoter DNA sequences. , 1983, Nucleic acids research.

[57]  E. Zennaro,et al.  Styrene, an Unpalatable Substrate with Complex Regulatory Networks , 2007 .

[58]  Herman P. Spaink,et al.  Promoters in the nodulation region of the Rhizobium leguminosarum Sym plasmid pRL1JI , 2004, Plant Molecular Biology.

[59]  A. Filloux,et al.  Two-Component Signal Transduction Systems: A Key to the Adaptative Potential of Pseudomonas Aeruginosa , 2004 .

[60]  Michael R. Sawaya,et al.  Dimerization allows DNA target site recognition by the NarL response regulator , 2002, Nature Structural Biology.

[61]  Ann M Stock,et al.  Two-component signal transduction. , 2000, Annual review of biochemistry.

[62]  D. Kahn,et al.  Conformational changes induced by phosphorylation of the FixJ receiver domain. , 1999, Structure.

[63]  V. de Lorenzo,et al.  Clues and consequences of DNA bending in transcription. , 1997, Annual review of microbiology.

[64]  F. Studier,et al.  Use of T7 RNA polymerase to direct expression of cloned genes. , 1990, Methods in enzymology.

[65]  P. Hagerman Flexibility of DNA. , 1988, Annual review of biophysics and biophysical chemistry.