Handbook of Statistical Systems Biology
暂无分享,去创建一个
Franca Fraternali | Jens Kleinjung | Anthony C. C. Coolen | Alessia Annibale | Luis P. Fernandes | A. Annibale | A. Coolen | F. Fraternali | J. Kleinjung | L. Fernandes
[1] Koujin Takeda,et al. Spectral density of random graphs with topological constraints , 2009, 0910.3556.
[2] Anthony C. C. Coolen,et al. Tailored graph ensembles as proxies or null models for real networks II: results on directed graphs , 2009, Journal of physics A: Mathematical and general.
[3] Bruce A. Reed,et al. A Critical Point for Random Graphs with a Given Degree Sequence , 1995, Random Struct. Algorithms.
[4] M. Newman,et al. Random graphs with arbitrary degree distributions and their applications. , 2000, Physical review. E, Statistical, nonlinear, and soft matter physics.
[5] M. Vidal,et al. Effect of sampling on topology predictions of protein-protein interaction networks , 2005, Nature Biotechnology.
[6] M E J Newman. Assortative mixing in networks. , 2002, Physical review letters.
[7] Sean R. Collins,et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae , 2006, Nature.
[8] Yasukazu Nakamura,et al. A Large-scale Protein–protein Interaction Analysis in Synechocystis sp. PCC6803 , 2007, DNA research : an international journal for rapid publication of reports on genes and genomes.
[9] R. Taylor. Contrained switchings in graphs , 1981 .
[10] F. Chung,et al. The average distances in random graphs with given expected degrees , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[11] James R. Knight,et al. A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae , 2000, Nature.
[12] Carsten Wiuf,et al. Sampling properties of random graphs: the degree distribution. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.
[13] Valmir Carneiro Barbosa,et al. A study of the edge-switching Markov-chain method for the generation of random graphs , 2005, ArXiv.
[14] Duncan J. Watts,et al. Collective dynamics of ‘small-world’ networks , 1998, Nature.
[15] Albert,et al. Emergence of scaling in random networks , 1999, Science.
[16] S. Kanaya,et al. Large-scale identification of protein-protein interaction of Escherichia coli K-12. , 2006, Genome research.
[17] P. Bork,et al. Proteome survey reveals modularity of the yeast cell machinery , 2006, Nature.
[18] Arun K. Ramani,et al. How complete are current yeast and human protein-interaction networks? , 2006, Genome Biology.
[19] D. Garlaschelli,et al. Maximum likelihood: extracting unbiased information from complex networks. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.
[20] C. Landry,et al. An in Vivo Map of the Yeast Protein Interactome , 2008, Science.
[21] A. Coolen,et al. Entropies of complex networks with hierarchically constrained topologies. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.
[22] Gary D Bader,et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry , 2002, Nature.
[23] Mike Tyers,et al. BioGRID: a general repository for interaction datasets , 2005, Nucleic Acids Res..
[24] J. J. Seidel,et al. A SURVEY OF TWO-GRAPHS , 1976 .
[25] A.C.C. Coolen,et al. Spin models on random graphs with controlled topologies beyond degree constraints , 2008, 0803.0489.
[26] A. Barabasi,et al. High-Quality Binary Protein Interaction Map of the Yeast Interactome Network , 2008, Science.
[27] Sandhya Rani,et al. Human Protein Reference Database—2009 update , 2008, Nucleic Acids Res..
[28] S. L. Wong,et al. Towards a proteome-scale map of the human protein–protein interaction network , 2005, Nature.
[29] Lan V. Zhang,et al. Evidence for dynamically organized modularity in the yeast protein–protein interaction network , 2004, Nature.
[30] R. Ozawa,et al. A comprehensive two-hybrid analysis to explore the yeast protein interactome , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[31] Albert-László Barabási,et al. Statistical mechanics of complex networks , 2001, ArXiv.
[32] Michael William Newman,et al. The Laplacian spectrum of graphs , 2001 .
[33] Thomas M. Cover,et al. Elements of Information Theory , 2005 .
[34] Yasukazu Nakamura,et al. A Large Scale Analysis of Protein–Protein Interactions in the Nitrogen-fixing Bacterium Mesorhizobium loti , 2008, DNA research : an international journal for rapid publication of reports on genes and genomes.
[35] Hyeong Jun An,et al. Estimating the size of the human interactome , 2008, Proceedings of the National Academy of Sciences.
[36] M. Vignali,et al. A protein interaction network of the malaria parasite Plasmodium falciparum , 2005, Nature.
[37] B. Snel,et al. Comparative assessment of large-scale data sets of protein–protein interactions , 2002, Nature.
[38] S. Shen-Orr,et al. Network motifs: simple building blocks of complex networks. , 2002, Science.
[39] Franca Fraternali,et al. Protein Networks Reveal Detection Bias and Species Consistency When Analysed by Information-Theoretic Methods , 2010, PloS one.
[40] Sean R. Collins,et al. Toward a Comprehensive Atlas of the Physical Interactome of Saccharomyces cerevisiae*S , 2007, Molecular & Cellular Proteomics.
[41] A. Coolen,et al. Tailored graph ensembles as proxies or null models for real networks II: results on directed graphs , 2011, Journal of physics A: Mathematical and general.
[42] P. Uetz,et al. The Binary Protein Interactome of Treponema pallidum – The Syphilis Spirochete , 2008, PloS one.
[43] Edward A. Bender,et al. The Asymptotic Number of Labeled Graphs with Given Degree Sequences , 1978, J. Comb. Theory A.
[44] Paul Erdös,et al. On random graphs, I , 1959 .
[45] A. Annibale,et al. Constrained Markovian Dynamics of Random Graphs , 2009, 0905.4155.
[46] H. Lehrach,et al. A Human Protein-Protein Interaction Network: A Resource for Annotating the Proteome , 2005, Cell.
[47] Stefan Bornholdt,et al. Handbook of Graphs and Networks: From the Genome to the Internet , 2003 .
[48] Julie A. Hines,et al. A proteome-wide protein interaction map for Campylobacter jejuni , 2007, Genome Biology.
[49] S. Shen-Orr,et al. Networks Network Motifs : Simple Building Blocks of Complex , 2002 .
[50] Jacob G. Foster,et al. Link and subgraph likelihoods in random undirected networks with fixed and partially fixed degree sequences. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.
[51] B. Mohar. THE LAPLACIAN SPECTRUM OF GRAPHS y , 1991 .
[52] P. Bork,et al. Functional organization of the yeast proteome by systematic analysis of protein complexes , 2002, Nature.
[53] M. Newman,et al. Statistical mechanics of networks. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.
[54] Sergey N. Dorogovtsev,et al. Critical phenomena in complex networks , 2007, ArXiv.
[55] K. Gunsalus,et al. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network , 2009, Nature Methods.
[56] M. Moran,et al. Large-scale mapping of human protein–protein interactions by mass spectrometry , 2007, Molecular systems biology.
[57] R. Kuehn. Spectra of sparse random matrices , 2008, 0803.2886.
[58] P. Holme,et al. Exploring the assortativity-clustering space of a network's degree sequence. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.