Multi-label classification of fundus images based on graph convolutional network

Diabetic Retinopathy (DR) is the most common and serious microvascular complication in the diabetic population. Using computer-aided diagnosis from the fundus images has become a method of detecting retinal diseases, but the detection of multiple lesions is still a difficult point in current research. This study proposed a multi-label classification method based on the graph convolutional network (GCN), so as to detect 8 types of fundus lesions in color fundus images. We collected 7459 fundus images (1887 left eyes, 1966 right eyes) from 2282 patients (1283 women, 999 men), and labeled 8 types of lesions, laser scars, drusen, cup disc ratio (C/D>0.6\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$C/D>0.6$$\end{document}), hemorrhages, retinal arteriosclerosis, microaneurysms, hard exudates and soft exudates. We constructed a specialized corpus of the related fundus lesions. A multi-label classification algorithm for fundus images was proposed based on the corpus, and the collected data were trained. The average overall F1 Score (OF1) and the average per-class F1 Score (CF1) of the model were 0.808 and 0.792 respectively. The area under the ROC curve (AUC) of our proposed model reached 0.986, 0.954, 0.946, 0.957, 0.952, 0.889, 0.937 and 0.926 for detecting laser scars, drusen, cup disc ratio, hemorrhages, retinal arteriosclerosis, microaneurysms, hard exudates and soft exudates, respectively. Our results demonstrated that our proposed model can detect a variety of lesions in the color images of the fundus, which lays a foundation for assisting doctors in diagnosis and makes it possible to carry out rapid and efficient large-scale screening of fundus lesions.

[1]  Max Welling,et al.  Semi-Supervised Classification with Graph Convolutional Networks , 2016, ICLR.

[2]  Omer Levy,et al.  word2vec Explained: deriving Mikolov et al.'s negative-sampling word-embedding method , 2014, ArXiv.

[3]  Early photocoagulation for diabetic retinopathy. ETDRS report number 9. Early Treatment Diabetic Retinopathy Study Research Group. , 1991, Ophthalmology.

[4]  Xiaoyong Du,et al.  Analogical Reasoning on Chinese Morphological and Semantic Relations , 2018, ACL.

[5]  Jian Sun,et al.  Deep Residual Learning for Image Recognition , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[6]  Kilian Q. Weinberger,et al.  Densely Connected Convolutional Networks , 2016, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[7]  R P Murphy,et al.  Frequency of adverse systemic reactions after fluorescein angiography. Results of a prospective study. , 1991, Ophthalmology.

[8]  L. Tang,et al.  The diagnostic accuracy of an intelligent and automated fundus disease image assessment system with lesion quantitative function (SmartEye) in diabetic patients , 2019, BMC Ophthalmology.

[9]  Roberto Hornero,et al.  Assessment of four neural network based classifiers to automatically detect red lesions in retinal images. , 2010, Medical engineering & physics.

[10]  Daniel Rubin,et al.  Retinal Lesion Detection With Deep Learning Using Image Patches , 2018, Investigative ophthalmology & visual science.

[11]  Andrew L. Maas Rectifier Nonlinearities Improve Neural Network Acoustic Models , 2013 .

[12]  J. Shaw,et al.  IDF Diabetes Atlas: Global estimates for the prevalence of diabetes for 2015 and 2040. , 2011, Diabetes research and clinical practice.

[13]  Frans Coenen,et al.  Convolutional Neural Networks for Diabetic Retinopathy , 2016, MIUA.

[14]  M. Stanford,et al.  Automated Detection of Diabetic Retinopathy using Fluorescein Angiography Photographs , 2016 .

[15]  Manesh Kokare,et al.  Statistical Geometrical Features for Microaneurysm Detection , 2018, Journal of Digital Imaging.

[16]  U. Rajendra Acharya,et al.  Automated segmentation of exudates, haemorrhages, microaneurysms using single convolutional neural network , 2017, Inf. Sci..

[17]  Michael Collins,et al.  Discriminative Training Methods for Hidden Markov Models: Theory and Experiments with Perceptron Algorithms , 2002, EMNLP.

[18]  U. Rajendra Acharya,et al.  Automated Identification of Diabetic Retinopathy Stages Using Digital Fundus Images , 2008, Journal of Medical Systems.

[19]  Chanjira Sinthanayothin,et al.  Automated screening system for diabetic retinopathy , 2003, 3rd International Symposium on Image and Signal Processing and Analysis, 2003. ISPA 2003. Proceedings of the.

[20]  Kai Jin,et al.  Multi-label classification of retinal lesions in diabetic retinopathy for automatic analysis of fundus fluorescein angiography based on deep learning , 2020, Graefe's Archive for Clinical and Experimental Ophthalmology.

[21]  Alán Aspuru-Guzik,et al.  Convolutional Networks on Graphs for Learning Molecular Fingerprints , 2015, NIPS.

[22]  Andrew Zisserman,et al.  Very Deep Convolutional Networks for Large-Scale Image Recognition , 2014, ICLR.

[23]  Jeffrey Pennington,et al.  GloVe: Global Vectors for Word Representation , 2014, EMNLP.

[24]  J. El-Annan,et al.  Adverse reactions to fluorescein angiography: A comprehensive review of the literature. , 2019, Survey of ophthalmology.

[25]  E. Gregersen,et al.  [Early photocoagulation of diabetic retinopathy]. , 1981, Ugeskrift for laeger.

[26]  Behzad Aliahmad,et al.  Fundus images analysis using deep features for detection of exudates, hemorrhages and microaneurysms , 2018, BMC Ophthalmology.

[27]  B. Klein,et al.  Global Prevalence and Major Risk Factors of Diabetic Retinopathy , 2012, Diabetes Care.

[28]  Jonathan Krause,et al.  Grader variability and the importance of reference standards for evaluating machine learning models for diabetic retinopathy , 2017, Ophthalmology.

[29]  Subhashini Venugopalan,et al.  Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs. , 2016, JAMA.

[30]  Xiu-Shen Wei,et al.  Multi-Label Image Recognition With Graph Convolutional Networks , 2019, 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

[31]  Mrinal Haloi,et al.  Improved Microaneurysm Detection using Deep Neural Networks , 2015, ArXiv.

[32]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..