Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

Susanna Atwell*, Yu S. Huang*, Bjarni J. Vilhjálmsson*, Glenda Willems*, Matthew Horton, Yan Li, Dazhe Meng, Alexander Platt, Aaron M. Tarone, Tina T. Hu, Rong Jiang, N. Wayan Muliyati, Xu Zhang, Muhammad Ali Amer, Ivan Baxter, Benjamin Brachi, Joanne Chory, Caroline Dean, Marilyne Debieu, Juliette de Meaux, Joseph R. Ecker, Nathalie Faure, Joel M. Kniskern, Jonathan D. G. Jones, Todd Michael, Adnane Nemri, Fabrice Roux, David E. Salt, Chunlao Tang, Marco Todesco, M. Brian Traw, Detlef Weigel, Paul Marjoram, Justin O. Borevitz, Joy Bergelson & Magnus Nordborg

[1]  Keyan Zhao,et al.  Genome-Wide Association Mapping in Arabidopsis Identifies Previously Known Flowering Time and Pathogen Resistance Genes , 2005, PLoS genetics.

[2]  R. Amasino,et al.  Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time. , 2000, Science.

[3]  Detlef Weigel,et al.  Recombination and linkage disequilibrium in Arabidopsis thaliana , 2007, Nature Genetics.

[4]  P. Oefner,et al.  The extent of linkage disequilibrium in Arabidopsis thaliana , 2002, Nature Genetics.

[5]  Keyan Zhao,et al.  An Arabidopsis Example of Association Mapping in Structured Samples , 2006, PLoS genetics.

[6]  D. Reich,et al.  Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.

[7]  P. Donnelly,et al.  Association mapping in structured populations. , 2000, American journal of human genetics.

[8]  Keyan Zhao,et al.  Variation in Molybdenum Content Across Broadly Distributed Populations of Arabidopsis thaliana Is Controlled by a Mitochondrial Molybdenum Transporter (MOT1) , 2008, PLoS genetics.

[9]  Noah A. Rosenberg,et al.  A General Population-Genetic Model for the Production by Population Structure of Spurious Genotype–Phenotype Associations in Discrete, Admixed or Spatially Distributed Populations , 2006, Genetics.

[10]  M. McMullen,et al.  A unified mixed-model method for association mapping that accounts for multiple levels of relatedness , 2006, Nature Genetics.

[11]  M. Daly,et al.  Genome-wide association studies for common diseases and complex traits , 2005, Nature Reviews Genetics.

[12]  D. Cox,et al.  A genomewide association study of skin pigmentation in a South Asian population. , 2007, American journal of human genetics.

[13]  J. Song,et al.  ACD6, a Novel Ankyrin Protein, Is a Regulator and an Effector of Salicylic Acid Signaling in the Arabidopsis Defense Response Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.015412. , 2003, The Plant Cell Online.

[14]  R. Amasino,et al.  FLOWERING LOCUS C Encodes a Novel MADS Domain Protein That Acts as a Repressor of Flowering , 1999, Plant Cell.

[15]  Ivan Baxter,et al.  Natural Variants of AtHKT1 Enhance Na+ Accumulation in Two Wild Populations of Arabidopsis , 2006, PLoS genetics.

[16]  M. Koornneef,et al.  Naturally occurring genetic variation in Arabidopsis thaliana. , 2004, Annual review of plant biology.

[17]  Judy H. Cho,et al.  Finding the missing heritability of complex diseases , 2009, Nature.

[18]  J. Dangl,et al.  Structure of the Arabidopsis RPM1 gene enabling dual specificity disease resistance , 1995, Science.

[19]  Mattias Jakobsson,et al.  The Pattern of Polymorphism in Arabidopsis thaliana , 2005, PLoS biology.

[20]  F. Hu,et al.  A Genome-Wide Association Study Identifies Novel Alleles Associated with Hair Color and Skin Pigmentation , 2008, PLoS genetics.

[21]  Keyan Zhao,et al.  A Nonparametric Test Reveals Selection for Rapid Flowering in the Arabidopsis Genome , 2006, PLoS biology.

[22]  D. Heckerman,et al.  Efficient Control of Population Structure in Model Organism Association Mapping , 2008, Genetics.

[23]  K. Roeder,et al.  Genomic Control for Association Studies , 1999, Biometrics.

[24]  Simon C. Potter,et al.  Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls , 2007, Nature.

[25]  M. Koornneef,et al.  Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis , 2006, Proceedings of the National Academy of Sciences.