High-throughput Serum N-Glycomics: Method Comparison and Application to Study Rheumatoid Arthritis and Pregnancy-associated Changes*
暂无分享,去创建一个
Erdmann Rapp | Udo Reichl | Pauline M. Rudd | Manfred Wuhrer | Maja Pučić-Baković | Gordan Lauc | Daniel I. R. Spencer | Albert Bondt | Daryl L. Fernandes | U. Reichl | E. Rapp | P. Rudd | R. Hennig | M. Pučić-Baković | G. Lauc | M. Wuhrer | D. Spencer | J. Hazes | R. Dolhain | A. Shubhakar | K. Reiding | R. Gardner | D. Fernandes | A. Bondt | I. Trbojević-Akmačić | Irena Trbojević-Akmačić | René Hennig | Richard A Gardner | Archana Shubhakar | Roisin O'Flaherty | Karli R. Reiding | Richard A. Gardner | Johanna M. W. Hazes | Radboud J. E. M. Dolhain | R. O’Flaherty | Archana Shubhakar
[1] Milos V Novotny,et al. Recent Advances in the Analysis of Complex Glycoproteins. , 2017, Analytical chemistry.
[2] R. Jefferis,et al. A comparative study of the N-linked oligosaccharide structures of human IgG subclass proteins. , 1990, The Biochemical journal.
[3] William S York,et al. Regulation of Glycan Structures in Animal Tissues , 2008, Journal of Biological Chemistry.
[4] P. Angel,et al. Antibody Panel Based N‐Glycan Imaging for N‐Glycoprotein Biomarker Discovery , 2019, Current protocols in protein science.
[5] Michael Pierce,et al. Tools for glycomics: relative quantitation of glycans by isotopic permethylation using 13CH3I. , 2007, Glycobiology.
[6] H. Uh,et al. Total plasma N-glycome changes during pregnancy. , 2014, Journal of proteome research.
[7] Niclas G Karlsson,et al. High-Throughput Analysis of the Plasma N-Glycome by UHPLC. , 2017, Methods in molecular biology.
[8] Y. V. D. van der Burgt,et al. Serum Protein N-Glycosylation Changes with Rheumatoid Arthritis Disease Activity during and after Pregnancy , 2018, Front. Med..
[9] Huijuan Li,et al. N-Glycosylamine-mediated isotope labeling for mass spectrometry-based quantitative analysis of N-linked glycans , 2013, Analytical and Bioanalytical Chemistry.
[10] Evan Bolton,et al. Symbol Nomenclature for Graphical Representations of Glycans. , 2015, Glycobiology.
[11] D. Muddiman,et al. Systematic comparison of reverse phase and hydrophilic interaction liquid chromatography platforms for the analysis of N-linked glycans. , 2012, Analytical chemistry.
[12] S. Y. Kim,et al. Characterization of Site-Specific N-Glycopeptide Isoforms of α-1-Acid Glycoprotein from an Interlaboratory Study Using LC-MS/MS. , 2016, Journal of proteome research.
[13] Manfred Wuhrer,et al. Comparison of methods for the analysis of therapeutic immunoglobulin G Fc-glycosylation profiles—Part 2: Mass spectrometric methods , 2015, mAbs.
[14] Alessio Ceroni,et al. GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans. , 2008, Journal of proteome research.
[15] E. B. D. Brinkman-van der Linden,et al. Inflammation-induced expression of sialyl Lewisx is not restricted to α1-acid glycoprotein but also occurs to a lesser extent on α1-antichymotrypsin and haptoglobin , 1998, Glycoconjugate Journal.
[16] Yehia Mechref,et al. High-throughput solid-phase permethylation of glycans prior to mass spectrometry. , 2008, Rapid communications in mass spectrometry : RCM.
[17] R. Goldman,et al. Glycan-specific precipitation of glycopeptides in high organic content sample solvents used in HILIC. , 2020, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.
[18] F. Altmann,et al. Comprehensive glyco‐proteomic analysis of human α1‐antitrypsin and its charge isoforms , 2006, Proteomics.
[19] G. Castellani,et al. Changes in IgG and total plasma protein glycomes in acute systemic inflammation , 2014, Scientific Reports.
[20] Gerald W. Hart,et al. Glycomics Hits the Big Time , 2010, Cell.
[21] B. Adamczyk,et al. Automated, high-throughput serum glycoprofiling platform. , 2015, Integrative biology : quantitative biosciences from nano to macro.
[22] Y. Mechref,et al. Isomeric Separation of Permethylated Glycans by Porous Graphitic Carbon (PGC)-LC-MS/MS at High Temperatures. , 2017, Analytical chemistry.
[23] A. Deelder,et al. Association between galactosylation of immunoglobulin G and improvement of rheumatoid arthritis during pregnancy is independent of sialylation. , 2013, Journal of proteome research.
[24] André M Deelder,et al. Plasma protein N-glycan profiles are associated with calendar age, familial longevity and health. , 2011, Journal of proteome research.
[25] Oliver Horlacher,et al. Towards a standardized bioinformatics infrastructure for N- and O-glycomics , 2019, Nature Communications.
[26] I. Rudan,et al. Comparative Performance of Four Methods for High-throughput Glycosylation Analysis of Immunoglobulin G in Genetic and Epidemiological Research , 2014, Molecular & Cellular Proteomics.
[27] G. Lauc,et al. Stability of N-glycan profiles in human plasma. , 2009, Glycobiology.
[28] Baoshan Zhang,et al. Structural basis for diverse N-glycan recognition by HIV-1–neutralizing V1–V2–directed antibody PG16 , 2013, Nature Structural &Molecular Biology.
[29] V. Reinhold,et al. The N-glycome of human plasma. , 2010, Journal of proteome research.
[30] Erdmann Rapp,et al. Towards personalized diagnostics via longitudinal study of the human plasma N-glycome. , 2016, Biochimica et biophysica acta.
[31] T. Spector,et al. Severe rheumatoid arthritis prohibits the pregnancy-induced decrease in α3-fucosylation of α1-acid glycoprotein , 1998, Glycoconjugate Journal.
[32] Y. Mechref,et al. LC-MS/MS analysis of permethylated N-glycans facilitating isomeric characterization , 2016, Analytical and Bioanalytical Chemistry.
[33] D. M. Ryan,et al. Rational design of potent sialidase-based inhibitors of influenza virus replication , 1993, Nature.
[34] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[35] R. Ubink,et al. A comparison of anti-HER2 IgA and IgG1 in vivo efficacy is facilitated by high N-glycan sialylation of the IgA , 2016, mAbs.
[36] M. Perola,et al. IgG Glycome in Colorectal Cancer , 2016, Clinical Cancer Research.
[37] Y. Rombouts,et al. Pregnancy-associated serum N-glycome changes studied by high-throughput MALDI-TOF-MS , 2016, Scientific Reports.
[38] M. Wuhrer,et al. High-Throughput Analysis and Automation for Glycomics Studies , 2014, Chromatographia.
[39] Pauline M. Rudd,et al. GlycoBase and autoGU: tools for HPLC-based glycan analysis , 2008, Bioinform..
[40] R. Contreras,et al. Ultrasensitive profiling and sequencing of N-linked oligosaccharides using standard DNA-sequencing equipment. , 2001, Glycobiology.
[41] J. Walker,et al. Abnormal immunoglobulin subclass patterns in women with a history of recurrent miscarriage. , 2001, Fertility and sterility.
[42] L. Hansson,et al. Reference values for α1‐acid glycoprotein, α1‐antitrypsin, albumin, haptoglobin, C‐reactive protein, IgA, IgG and IgM during pregnancy , 2008, Acta obstetricia et gynecologica Scandinavica.
[43] Akira Togayachi,et al. Comparison of analytical methods for profiling N- and O-linked glycans from cultured cell lines , 2016, Glycoconjugate Journal.
[44] J. Yoo,et al. Analytical platform for glycomic characterization of recombinant erythropoietin biotherapeutics and biosimilars by MS. , 2013, Bioanalysis.
[45] Pauline M Rudd,et al. Glycosylation as a marker for inflammatory arthritis. , 2014, Cancer biomarkers : section A of Disease markers.
[46] S. Willemsen,et al. Disease activity of rheumatoid arthritis during pregnancy: results from a nationwide prospective study. , 2008, Arthritis and rheumatism.
[47] A. Geerts,et al. A Glycomics-Based Test Predicts the Development of Hepatocellular Carcinoma in Cirrhosis , 2016, Clinical Cancer Research.
[48] Ajit Varki,et al. Biological roles of glycans , 2016, Glycobiology.
[49] M. Wuhrer,et al. Human plasma protein N-glycosylation , 2015, Glycoconjugate Journal.
[50] Erdmann Rapp,et al. N-Glycosylation Fingerprinting of Viral Glycoproteins by xCGE-LIF. , 2015, Methods in molecular biology.
[51] Kelly K. Lee,et al. Site-Specific Mapping of Sialic Acid Linkage Isomers by Ion Mobility Spectrometry. , 2016, Analytical chemistry.
[52] R. Dwek,et al. Association of rheumatoid arthritis and primary osteoarthritis with changes in the glycosylation pattern of total serum IgG , 1985, Nature.
[53] P. van Paassen,et al. Galactosylation and Sialylation Levels of IgG Predict Relapse in Patients With PR3-ANCA Associated Vasculitis , 2017, EBioMedicine.
[54] I. Gudelj,et al. High-throughput glycomics: Optimization of sample preparation , 2015, Biochemistry (Moscow).
[55] N. Packer,et al. Discrimination of Isomers of Released N- and O-Glycans Using Diagnostic Product Ions in Negative Ion PGC-LC-ESI-MS/MS , 2018, Journal of The American Society for Mass Spectrometry.
[56] Knut Irgum,et al. Hydrophilic interaction chromatography. , 2006, Journal of separation science.
[57] Manfred Wuhrer,et al. Comparison of methods for the analysis of therapeutic immunoglobulin G Fc-glycosylation profiles—Part 1: Separation-based methods , 2014, mAbs.
[58] Y. Rombouts,et al. Immunoglobulin G (IgG) Fab Glycosylation Analysis Using a New Mass Spectrometric High-throughput Profiling Method Reveals Pregnancy-associated Changes* , 2014, Molecular & Cellular Proteomics.
[59] Naoyuki Taniguchi,et al. Comparison of the methods for profiling glycoprotein glycans--HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. , 2007, Glycobiology.
[60] Y. V. D. van der Burgt,et al. Automation of High-Throughput Mass Spectrometry-Based Plasma N-Glycome Analysis with Linkage-Specific Sialic Acid Esterification. , 2015, Journal of proteome research.
[61] Tilman Schlothauer,et al. In Vitro Glycoengineering of IgG1 and Its Effect on Fc Receptor Binding and ADCC Activity , 2015, PloS one.
[62] A. Klein. Chapter 2 Human Total Serum N‐Glycome , 2008 .
[63] Lingjun Li,et al. Capillary Electrophoresis-Electrospray Ionization-Mass Spectrometry for Quantitative Analysis of Glycans Labeled with Multiplex Carbonyl-Reactive Tandem Mass Tags. , 2015, Analytical chemistry.
[64] Jack Satsangi,et al. Changes to Serum Sample Tube and Processing Methodology Does Not Cause Inter-Individual Variation in Automated Whole Serum N-Glycan Profiling in Health and Disease , 2015, PloS one.
[65] H. Freeze. Genetic defects in the human glycome , 2006 .
[66] Manfred Wuhrer,et al. Human Plasma N-glycosylation as Analyzed by Matrix-Assisted Laser Desorption/Ionization-Fourier Transform Ion Cyclotron Resonance-MS Associates with Markers of Inflammation and Metabolic Health* , 2016, Molecular & Cellular Proteomics.
[67] Raymond A. Dwek,et al. Emerging Principles for the Therapeutic Exploitation of Glycosylation , 2014, Science.
[68] Israel Steinfeld,et al. Association of N-glycosylation with breast carcinoma and systemic features using high-resolution quantitative UPLC. , 2014, Journal of proteome research.
[69] T. Spector,et al. Severe rheumatoid arthritis prohibits the pregnancy-induced decrease in alpha3-fucosylation of alpha1-acid glycoprotein. , 1998, Glycoconjugate journal.
[70] Haixu Tang,et al. Interlaboratory Study on Differential Analysis of Protein Glycosylation by Mass Spectrometry: The ABRF Glycoprotein Research Multi-Institutional Study 2012* , 2013, Molecular & Cellular Proteomics.
[71] Wei Wang,et al. Genomics Meets Glycomics—The First GWAS Study of Human N-Glycome Identifies HNF1α as a Master Regulator of Plasma Protein Fucosylation , 2010, PLoS genetics.
[72] André M Deelder,et al. High-throughput profiling of protein N-glycosylation by MALDI-TOF-MS employing linkage-specific sialic acid esterification. , 2014, Analytical chemistry.
[73] Jeanine J. Houwing-Duistermaat,et al. Targeted Biomarker Discovery by High Throughput Glycosylation Profiling of Human Plasma Alpha1-Antitrypsin and Immunoglobulin A , 2013, PloS one.
[74] Jeanine J. Houwing-Duistermaat,et al. Loci Associated with N-Glycosylation of Human Immunoglobulin G Show Pleiotropy with Autoimmune Diseases and Haematological Cancers , 2013, PLoS genetics.
[75] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .