Cluster analysis and promoter modelling as bioinformatics tools for the identification of target genes from expression array data.
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[1] M. T. Brewer,et al. Interleukin 1 receptor antagonist is a member of the interleukin 1 gene family: evolution of a cytokine control mechanism. , 1991, Proceedings of the National Academy of Sciences of the United States of America.
[2] T. Werner,et al. MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. , 1995, Nucleic acids research.
[3] K Frech,et al. Common modular structure of lentivirus LTRs. , 1996, Virology.
[4] J. Fickett. Coordinate positioning of MEF2 and myogenin binding sites. , 1996, Gene.
[5] J. Fickett,et al. Eukaryotic promoter recognition. , 1997, Genome research.
[6] E. Davidson,et al. The hardwiring of development: organization and function of genomic regulatory systems. , 1997, Development.
[7] R. Tjian,et al. Mechanisms of transcriptional activation: differences and similarities between yeast, Drosophila, and man. , 1997, Current opinion in genetics & development.
[8] E. Olson,et al. Modular regulation of muscle gene transcription: a mechanism for muscle cell diversity. , 1997, Trends in genetics : TIG.
[9] T. Werner,et al. A novel method to develop highly specific models for regulatory units detects a new LTR in GenBank which contains a functional promoter. , 1997, Journal of molecular biology.
[10] J. Fickett,et al. Identification of regulatory regions which confer muscle-specific gene expression. , 1998, Journal of molecular biology.
[11] J. Barker,et al. Large-scale temporal gene expression mapping of central nervous system development. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[12] I. Jonassen,et al. Predicting gene regulatory elements in silico on a genomic scale. , 1998, Genome research.
[13] L. Wakefield,et al. Identification of the start sites for the 1.9- and 1.4-kb rat transforming growth factor-beta1 transcripts and their effect on translational efficiency. , 1998, Gene.
[14] T. Heinemeyer,et al. Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL , 1998, Nucleic Acids Res..
[15] J. Stavnezer,et al. Interaction of Stat6 and NF-κB: Direct Association and Synergistic Activation of Interleukin-4-Induced Transcription , 1998, Molecular and Cellular Biology.
[16] D. Botstein,et al. Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[17] Thomas Werner,et al. Muscle actin genes: A first step towards computational classification of tissue specific promoters , 1998, Silico Biol..
[18] J. Collado-Vides,et al. Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. , 1998, Journal of molecular biology.
[19] David R. Gilbert,et al. Approaches to the Automatic Discovery of Patterns in Biosequences , 1998, J. Comput. Biol..
[20] S. O’Brien,et al. The promise of comparative genomics in mammals. , 1999, Science.
[21] Melanie E. Goward,et al. The DNA sequence of human chromosome 22 , 1999, Nature.
[22] M. Clark,et al. Comparative genomics: the key to understanding the human genome project , 1999, BioEssays : news and reviews in molecular, cellular and developmental biology.
[23] E. Wingender,et al. Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells. , 1999, Journal of molecular biology.
[24] T. Werner. Models for prediction and recognition of eukaryotic promoters , 1999, Mammalian Genome.
[25] Thomas Werner,et al. Functional promoter modules can be detected by formal models independent of overall nucleotide sequence similarity , 1999, Bioinform..
[26] J. Graves,et al. The promise of comparative genomics in mammals : Genome , 1999 .
[27] Thomas Werner,et al. Regulatory modules shared within gene classes as well as across gene classes can be detected by the same in silico approach , 2000, Silico Biol..
[28] Hans-Werner Mewes,et al. Integrative Analysis of Protein Interaction Data , 2000, ISMB.
[29] Roded Sharan,et al. Center CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis , 2000, ISMB.
[30] Saurabh Sinha,et al. A Statistical Method for Finding Transcription Factor Binding Sites , 2000, ISMB.
[31] Alexander E. Kel,et al. COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation , 2000, Nucleic Acids Res..
[32] T. Werner,et al. Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach. , 2000, Journal of molecular biology.
[33] Christian A. Rees,et al. Systematic variation in gene expression patterns in human cancer cell lines , 2000, Nature Genetics.
[34] George M. Church,et al. Biclustering of Expression Data , 2000, ISMB.
[35] M. Hattori,et al. The DNA sequence of human chromosome 21 , 2000, Nature.
[36] Ian Holmes,et al. Finding Regulatory Elements Using Joint Likelihoods for Sequence and Expression Profile Data , 2000, ISMB.
[37] Pierre Baldi,et al. Analysis of Yeast's ORF Upstream Regions by Parallel Processing, Microarrays, and Computational Methods , 2000, ISMB.
[38] Valérie Gailus-Durner,et al. Experimental data of a single promoter can be used for in silico detection of genes with related regulation in the absence of sequence similarity , 2001, Mammalian Genome.
[39] D. Steiner,et al. Expression profiling of pancreatic beta-cells: glucose regulation of secretory and metabolic pathway genes. , 2000, Diabetes.