Genetic dissection of seminal root architecture in elite durum wheat germplasm

Although root architecture has been shown to play an important role in crop performance, particularly under drought conditions, no information is available on the genetic control of root traits in durum wheat, a crop largely grown in rainfed areas with low rainfall. In our study, a panel of 57 elite durum wheat accessions were evaluated under controlled conditions for root and shoot traits at the seedling stage. Significant genetic variability was detected for all the root and shoot traits that were investigated. Correlation analysis suggested that root and shoot features were only partially controlled by common sets of genes. The high linkage disequilibrium (up to 5 cM) present in the germplasm collection herein considered allowed us to use simple sequence repeat-based association mapping to identify chromosome regions with significant effects on the investigated traits. In total, 15 chromosome regions showed significant effects on one or more root architectural features. A number of these regions also influenced shoot traits and, in some cases, plant height measured in field conditions. Major effects were detected on chromosome arms 2AL (at Xgwm294), 7AL (at Xcfa2257 and Xgwm332) and 7BL (at Xgwm577 and Xcfa2040). The accessions with the most remarkable differences in root features will provide a valuable opportunity to assemble durum wheat mapping populations well suited for ascertaining the effects of root architecture on water use efficiency and grain yield.

[1]  S. Asseng,et al.  Modelling yield losses of aluminium-resistant and aluminium-sensitive wheat due to subsurface soil acidity: effects of rainfall, liming and nitrogen application , 2003, Plant and Soil.

[2]  Dolors Villegas,et al.  Evaluation of Grain Yield and Its Components in Durum Wheat under Mediterranean Conditions , 2003 .

[3]  M. Iijima,et al.  Deep Rooting in Winter Wheat: Rooting Nodes of Deep Roots in Two Cultivars with Deep and Shallow Root Systems , 2001, Plant production science.

[4]  J. Lynch Root Architecture and Plant Productivity , 1995, Plant physiology.

[5]  M. M. Giuliani,et al.  Seedling characteristics in hydroponic culture and field performance of maize genotypes with different resistance to root lodging , 1998 .

[6]  P. W. Brown,et al.  Alfalfa Water Potential Measurement: A Comparison of the Pressure Chamber and Leaf Dew-point Hygrometers 1 , 1981 .

[7]  J. Araus,et al.  Promising eco-physiological traits for genetic improvement of cereal yields in Mediterranean environments , 2005 .

[8]  Greg J. Rebetzke,et al.  Genetic improvement of early vigour in wheat , 1999 .

[9]  Roberto Tuberosa,et al.  Genomics-based approaches to improve drought tolerance of crops. , 2006, Trends in plant science.

[10]  P. S. Baenziger,et al.  High-density mapping and comparative analysis of agronomically important traits on wheat chromosome 3A. , 2006, Genomics.

[11]  F. Zhang,et al.  Diversity enhances agricultural productivity via rhizosphere phosphorus facilitation on phosphorus-deficient soils , 2007, Proceedings of the National Academy of Sciences.

[12]  B. Hu,et al.  QTLs and epistasis for seminal root length under a different water supply in rice (Oryza sativa L.) , 2001, Theoretical and Applied Genetics.

[13]  José Luis Araus,et al.  Water use efficiency in C3 cereals under Mediterranean conditions: a review of physiological aspects , 2007 .

[14]  A. Börner,et al.  Mapping of quantitative trait loci determining agronomic important characters in hexaploid wheat (Triticum aestivum L.) , 2002, Theoretical and Applied Genetics.

[15]  R. C. Muchow,et al.  A critical evaluation of traits for improving crop yields in water-limited environments. , 1990 .

[16]  R. Richards,et al.  Seminal root morphology and water use of wheat. , 1981 .

[17]  S. Salvi,et al.  Mapping QTLs regulating morpho-physiological traits and yield: case studies, shortcomings and perspectives in drought-stressed maize. , 2002, Annals of botany.

[18]  José Luis Araus,et al.  Environmental Factors Determining Carbon Isotope Discrimination and Yield in Durum Wheat under Mediterranean Conditions , 2003 .

[19]  Peter deVoil,et al.  The role of root architectural traits in adaptation of wheat to water-limited environments. , 2006, Functional plant biology : FPB.

[20]  M. Kharrat,et al.  Inheritance of deeper root length and grain yield in half‐diallel durum wheat (Triticum durum) crosses , 2007 .

[21]  K. Sayre,et al.  Adapting wheat cultivars to resource conserving farming practices and human nutritional needs , 2005 .

[22]  J. Flexas,et al.  Prospects for crop production under drought: research priorities and future directions , 2005 .

[23]  J. Araus,et al.  Breeding cereals for Mediterranean conditions: ecophysiological clues for biotechnology application , 2003 .

[24]  R. Tuberosa,et al.  Microsatellite analysis reveals a progressive widening of the genetic basis in the elite durum wheat germplasm , 2003, Theoretical and Applied Genetics.

[25]  M. Blair,et al.  Quantitative Trait Loci for Root Architecture Traits Correlated with Phosphorus Acquisition in Common Bean , 2006 .

[26]  N. Ames,et al.  Mapping quantitative trait loci controlling agronomic traits in the spring wheat cross RL4452 × 'AC Domain' , 2005 .

[27]  J. Holland,et al.  Genetic architecture of complex traits in plants. , 2007, Current opinion in plant biology.

[28]  E. Nevo,et al.  Domestication quantitative trait loci in Triticum dicoccoides, the progenitor of wheat , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[29]  Richard Trethowan,et al.  Drought-adaptive traits derived from wheat wild relatives and landraces. , 2006, Journal of Experimental Botany.

[30]  A. G. Bengough,et al.  Gel observation chamber for rapid screening of root traits in cereal seedlings , 2004, Plant and Soil.

[31]  J. Passioura The effect of root geometry on the yield of wheat growing on stored water , 1972 .

[32]  Shawn M. Kaeppler,et al.  Detection of quantitative trait loci for seminal root traits in maize (Zea mays L.) seedlings grown under differential phosphorus levels , 2006, Theoretical and Applied Genetics.

[33]  R. Jorgensen,et al.  Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[34]  J. Araus,et al.  Improving water use efficiency in Mediterranean agriculture: what limits the adoption of new technologies? , 2007 .

[35]  Anne-Kristin Løes,et al.  Genetic variation in specific root length in Scandinavian wheat and barley accessions , 2004, Euphytica.

[36]  G. McDonald,et al.  Shoot growth, root growth and grain yield of bread and durum wheat in South Australia , 1999 .

[37]  P. Njau,et al.  Root and shoot characteristics as selection criteria for drought tolerance in bread wheat (triticum aestivum L.) at seedling stage under tropical environment , 2006 .

[38]  R. Tuberosa,et al.  Population structure and long-range linkage disequilibrium in a durum wheat elite collection , 2005, Molecular Breeding.

[39]  J. Araus,et al.  Plant breeding and drought in C3 cereals: what should we breed for? , 2002, Annals of botany.

[40]  M. Ganal,et al.  Advanced backcross QTL analysis in progenies derived from a cross between a German elite winter wheat variety and a synthetic wheat (Triticum aestivumL.) , 2004, Theoretical and Applied Genetics.

[41]  K. Edwards,et al.  A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.) , 2004, Theoretical and Applied Genetics.

[42]  J. Araus,et al.  Relationships of grain δ13C and δ18O with wheat phenology and yield under water‐limited conditions , 2007 .

[43]  B. Courtois,et al.  Quantitative trait loci for root-penetration ability and root thickness in rice: comparison of genetic backgrounds. , 2000, Genome.

[44]  P. Donnelly,et al.  Inference of population structure using multilocus genotype data. , 2000, Genetics.

[45]  M. Sorrells,et al.  Association Mapping of Kernel Size and Milling Quality in Wheat (Triticum aestivum L.) Cultivars , 2006, Genetics.

[46]  J. Palta,et al.  Root characteristics of vigorous wheat improve early nitrogen uptake , 2006 .

[47]  S. Ceccarelli,et al.  Seminal root morphology and coleoptile length in wild (Hordeum vulgare ssp. spontaneum) and cultivated (Hordeum vulgare ssp. vulgare) barley , 2004, Euphytica.

[48]  M. Karrou,et al.  Root and shoot growth, water use and water use efficiency of spring durum wheat under early-season drought , 1998 .

[49]  J. Waines,et al.  Genetic Variability for Seedling Root Numbers in Wild and Domesticated Wheats 1 , 1979 .

[50]  S. Salvi,et al.  Identification of QTLs for root characteristics in maize grown in hydroponics and analysis of their overlap with QTLs for grain yield in the field at two water regimes , 2002, Plant Molecular Biology.

[51]  A. Price,et al.  Marker-assisted selection to introgress rice QTLs controlling root traits into an Indian upland rice variety , 2006, Theoretical and Applied Genetics.

[52]  C. Royo,et al.  A panel of elite accessions of durum wheat (Triticum durum Desf.) suitable for association mapping studies , 2006, Plant Genetic Resources.

[53]  X. Draye,et al.  Root system architecture: opportunities and constraints for genetic improvement of crops. , 2007, Trends in plant science.

[54]  W. Powell,et al.  Methods for linkage disequilibrium mapping in crops. , 2007, Trends in plant science.

[55]  M. Ganal,et al.  A microsatellite map of wheat. , 1998, Genetics.

[56]  E. Buckler,et al.  Plant molecular diversity and applications to genomics. , 2002, Current opinion in plant biology.

[57]  J. Mayer,et al.  Associations between plant production and some physiological components of drought resistance in wheat , 1983 .

[58]  S. Chandra,et al.  Genetic variability of drought-avoidance root traits in the mini-core germplasm collection of chickpea (Cicer arietinum L.). , 2006, Euphytica.

[59]  John Gorham,et al.  Upland rice grown in soil-filled chambers and exposed to contrasting water-deficit regimes. I. Root distribution, water use and plant water status , 2002 .

[60]  Y. Jitsuyama,et al.  Genotypic Variation of the Ability of Root to Penetrate Hard Soil Layers among Japanese Wheat Cultivars , 2006 .

[61]  R. Tuberosa,et al.  Root and shoot traits of maize inbred lines grown in the field and in hydroponic culture and their relationships with root lodging , 1998 .

[62]  L. L. Darrah,et al.  Detection of QTLs for vertical root pulling resistance in maize and overlap with QTLs for root traits in hydroponics and for grain yield under different water regimes , 2002 .

[63]  Gustavo A. Slafer,et al.  Can wheat yield be assessed by early measurements of Normalized Difference Vegetation Index , 2007 .

[64]  K. McPhee,et al.  Variation for Seedling Root Architecture in the Core Collection of Pea Germplasm , 2005 .

[65]  J. Ray,et al.  Variation in root penetration ability, osmotic adjustment and dehydration tolerance among accessions of rice adapted to rainfed lowland and upland ecosystems , 2001 .

[66]  M. Karrou,et al.  Morphological attributes associated with early-season drought tolerance in spring durum wheat in a mediterranean environment , 1998, Euphytica.

[67]  Ricardo Antunes Azevedo,et al.  Nitrogen use efficiency. 1. Uptake of nitrogen from the soil , 2006 .

[68]  P. Monneveux,et al.  Root characteristics in durum wheat (T.turgidum conv.durum) and some wild Triticeae species.Genetic variation and relationship with plant architecture , 2000 .

[69]  P. D. Brown,et al.  Molecular detection of QTLs for agronomic and quality traits in a doubled haploid population derived from two Canadian wheats (Triticum aestivum L.) , 2006, Theoretical and Applied Genetics.

[70]  M. Stephens,et al.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. , 2003, Genetics.

[71]  Y. W. Huang,et al.  Comparison of quantitative trait loci controlling seedling characteristics at two seedling stages using rice recombinant inbred lines , 2004, Theoretical and Applied Genetics.

[72]  A. Oyanagi,et al.  The Direction of Growth of Seminal Roots of Triticum aestivum L. and Experimental Modification Thereof , 1994 .

[73]  P. Langridge,et al.  Application of genomics to molecular breeding of wheat and barley. , 2007, Advances in genetics.

[74]  B. N. Devaiah,et al.  Phosphate Homeostasis and Root Development in Arabidopsis Are Synchronized by the Zinc Finger Transcription Factor ZAT61[W][OA] , 2007, Plant Physiology.

[75]  R. Doerge,et al.  Empirical threshold values for quantitative trait mapping. , 1994, Genetics.

[76]  D. Villegas,et al.  Grain growth and yield formation of durum wheat grown at contrasting latitudes and water regimes in a Mediterranean environment , 2006 .

[77]  S. Morita,et al.  Lateral root development, including responses to soil drying, of maize (Zea mays) and wheat (Triticum aestivum) seminal roots , 2006 .