Integration of Genomics into Rice Breeding

[1]  M. Yano,et al.  Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms , 2010, BMC Genomics.

[2]  M. Yano,et al.  Detection of quantitative trait loci controlling pre-harvest sprouting resistance by using backcrossed populations of japonica rice cultivars , 2010, Theoretical and Applied Genetics.

[3]  Norikuni Saka,et al.  Loss of Function of a Proline-Containing Protein Confers Durable Disease Resistance in Rice , 2009, Science.

[4]  Xian-Jun Song,et al.  The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water , 2009, Nature.

[5]  Peter J. Bradbury,et al.  Genetic Properties of the Maize Nested Association Mapping Population , 2009, Science.

[6]  Kenneth L. McNally,et al.  Genomewide SNP variation reveals relationships among landraces and modern varieties of rice , 2009, Proceedings of the National Academy of Sciences.

[7]  R. Fernando,et al.  Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study , 2009, Genetics.

[8]  M. Yano,et al.  Towards the Understanding of Complex Traits in Rice: Substantially or Superficially? , 2009, DNA research : an international journal for rapid publication of reports on genes and genomes.

[9]  Songnian Hu,et al.  SNP deserts of Asian cultivated rice: genomic regions under domestication , 2009, Journal of evolutionary biology.

[10]  Wei He,et al.  Control of rice grain-filling and yield by a gene with a potential signature of domestication , 2008, Nature Genetics.

[11]  Shojiro Tamaki,et al.  Florigen and the Photoperiodic Control of Flowering in Rice , 2008, Rice.

[12]  Kaworu Ebana,et al.  Deletion in a gene associated with grain size increased yields during rice domestication , 2008, Nature Genetics.

[13]  Lei Wang,et al.  Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice , 2008, Nature Genetics.

[14]  R R Mir,et al.  Array-based high-throughput DNA markers for crop improvement , 2008, Heredity.

[15]  W. Powell,et al.  From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants. , 2008, Current opinion in plant biology.

[16]  M. Yano,et al.  Genetic dissection and pyramiding of quantitative traits for panicle architecture by using chromosomal segment substitution lines in rice , 2008, Theoretical and Applied Genetics.

[17]  M. Yano,et al.  Development of Chromosome Segment Substitution Lines Derived from Backcross between indica Donor Rice Cultivar ‘Nona Bokra’ and japonica Recipient Cultivar ‘Koshihikari’ , 2007 .

[18]  E. Septiningsih,et al.  A marker-assisted backcross approach for developing submergence-tolerant rice cultivars , 2007, Theoretical and Applied Genetics.

[19]  Rajeev K. Varshney,et al.  Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties , 2006, Proceedings of the National Academy of Sciences.

[20]  M. Yano,et al.  Development of Isogenic Lines of Rice Cultivar Koshihikari with Early and Late Heading by Marker-assisted Selection , 2006 .

[21]  J. Bailey-Serres,et al.  Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice , 2006, Nature.

[22]  M. Matsuoka,et al.  Identification, isolation and pyramiding of quantitative trait loci for rice breeding. , 2006, Trends in plant science.

[23]  M. Sorrells,et al.  Association Mapping of Kernel Size and Milling Quality in Wheat (Triticum aestivum L.) Cultivars , 2006, Genetics.

[24]  M. Kawase,et al.  Development of an RFLP-based Rice Diversity Research Set of Germplasm , 2005 .

[25]  Takuji Sasaki,et al.  The map-based sequence of the rice genome , 2005, Nature.

[26]  Q. Qian,et al.  Cytokinin Oxidase Regulates Rice Grain Production , 2005, Science.

[27]  K. Gunderson,et al.  High-throughput SNP genotyping on universal bead arrays. , 2005, Mutation research.

[28]  Yoshinobu Takeuchi,et al.  Construction and evaluation of chromosome segment substitution lines carrying overlapping chromosome segments of indica rice cultivar 'Kasalath' in a genetic background of japonica elite cultivar 'Koshihikari' , 2005 .

[29]  F Alex Feltus,et al.  An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments. , 2004, Genome research.

[30]  Kazuyuki Doi,et al.  Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. , 2004, Genes & development.

[31]  M. Yano,et al.  Delimitation of the chromosomal region for a quantitative trait locus, qUVR-10, conferring resistance to ultraviolet-B radiation in rice (Oryza sativa L.) , 2004, Theoretical and Applied Genetics.

[32]  M. Yano,et al.  Mapping of quantitative trait loci associated with ultraviolet-B resistance in rice (Oryza sativa L.) , 2003, Theoretical and Applied Genetics.

[33]  B. Han,et al.  Genome-wide intraspecific DNA-sequence variations in rice. , 2003, Current opinion in plant biology.

[34]  Zhengwei Liang,et al.  Fine Mapping and Characterization of Quantitative Trait Loci Hd4 and Hd5 Controlling Heading Date in Rice. , 2003 .

[35]  Takashi Araki,et al.  Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. , 2002, Plant & cell physiology.

[36]  G. S. Khush,et al.  Green revolution: A mutant gibberellin-synthesis gene in rice , 2002, Nature.

[37]  L. Stein,et al.  Gramene: Development and Integration of Trait and Gene Ontologies for Rice , 2002, Comparative and functional genomics.

[38]  M. Yano,et al.  Identification and Characterization of a Quantitative Trait Locus, Hd9, Controlling Heading Date in Rice , 2002 .

[39]  M. Yano,et al.  Genetic control of flowering time in rice, a short-day plant. , 2001, Plant physiology.

[40]  S. Fukuoka,et al.  QTL analysis and mapping of pi21, a recessive gene for field resistance to rice blast in Japanese upland rice , 2001, Theoretical and Applied Genetics.

[41]  M. Yano,et al.  Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the α subunit of protein kinase CK2 , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[42]  M. Yano,et al.  Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS , 2000, Plant Cell.

[43]  M. Yano,et al.  Characterization and detection of epistatic interactions of 3 QTLs, Hd1, Hd2, and Hd3, controlling heading date in rice using nearly isogenic lines , 2000, Theoretical and Applied Genetics.

[44]  M. Yano,et al.  Identification of heading date quantitative trait locus Hd6 and characterization of its epistatic interactions with Hd2 in rice using advanced backcross progeny. , 2000, Genetics.

[45]  E. Septiningsih,et al.  Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond. , 2009, Annals of botany.

[46]  S. Schuster.  Next-generation sequencing transforms today's biology , 2008, Nature Methods.

[47]  T. Izawa.  Daylength measurements by rice plants in photoperiodic short-day flowering. , 2007, International review of cytology.

[48]  M. Yano,et al.  Mapping Quantitative Trait Loci Controlling Low Temperature Germinability in Rice (Oryza sativa L.) , 2001 .