Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature
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[1] Pierre Gönczy,et al. Phosphorylation of SAS-6 by ZYG-1 is critical for centriole formation in C. elegans embryos. , 2009, Developmental cell.
[2] Martín Pérez-Pérez,et al. Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow , 2016, Database J. Biol. Databases Curation.
[3] The Gene Ontology Consortium. Expansion of the Gene Ontology knowledgebase and resources , 2016, Nucleic Acids Res..
[4] Jeyakumar Natarajan,et al. An overview of the BioCreative 2012 Workshop Track III: interactive text mining task , 2013, Database J. Biol. Databases Curation.
[5] Zhiyong Lu,et al. BioCreative III interactive task: an overview , 2011, BMC Bioinformatics.
[6] John M. Hancock,et al. Using ontologies to describe mouse phenotypes , 2004, Genome Biology.
[7] K. Bretonnel Cohen,et al. Text mining for the biocuration workflow , 2012, Database J. Biol. Databases Curation.
[8] André L. M. Santos,et al. BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID , 2016, Database J. Biol. Databases Curation.
[9] Kimberly Van Auken,et al. Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR , 2012, Database J. Biol. Databases Curation.
[10] Kimberly Van Auken,et al. Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation , 2009, BMC Bioinformatics.
[11] Jian Zhang,et al. Protein Ontology (PRO): enhancing and scaling up the representation of protein entities , 2016, Nucleic Acids Res..
[12] Claire O'Donovan,et al. Biocurators and Biocuration: surveying the 21st century challenges , 2012, Database J. Biol. Databases Curation.
[13] Jon R Lorsch,et al. Perspective: Sustaining the big-data ecosystem , 2015, Nature.
[14] The Gene Ontology Consortium,et al. Expansion of the Gene Ontology knowledgebase and resources , 2016, Nucleic Acids Res..
[15] K. Bretonnel Cohen,et al. The structural and content aspects of abstracts versus bodies of full text journal articles are different , 2010, BMC Bioinformatics.
[16] R. Durbin,et al. The Sequence Ontology: a tool for the unification of genome annotations , 2005, Genome Biology.
[17] Kara Dolinski,et al. The BioC-BioGRID corpus: full text articles annotated for curation of protein–protein and genetic interactions , 2017, Database J. Biol. Databases Curation.
[18] Bohdan Schneider,et al. A Biocurator Perspective: Annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank , 2006, PLoS Comput. Biol..
[19] S. Lewis,et al. Uberon, an integrative multi-species anatomy ontology , 2012, Genome Biology.
[20] K. Bretonnel Cohen,et al. A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools , 2012, BMC Bioinformatics.
[21] Juliane Fluck,et al. Construction of biological networks from unstructured information based on a semi-automated curation workflow , 2015, Database J. Biol. Databases Curation.
[22] K. Bretonnel Cohen,et al. U-Compare: A modular NLP workflow construction and evaluation system , 2011, IBM J. Res. Dev..
[23] Christoph Steinbeck,et al. The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013 , 2012, Nucleic Acids Res..
[24] Hans-Michael Müller,et al. Textpresso: An Ontology-Based Information Retrieval and Extraction System for Biological Literature , 2004, PLoS biology.
[25] Jimmy J. Lin. Is searching full text more effective than searching abstracts? , 2009, BMC Bioinformatics.
[26] K. Bretonnel Cohen,et al. Manual curation is not sufficient for annotation of genomic databases , 2007, ISMB/ECCB.
[27] A. Valencia,et al. Linking genes to literature: text mining, information extraction, and retrieval applications for biology , 2008, Genome Biology.
[28] Hilmar Lapp,et al. Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals , 2016, PloS one.
[29] Kimberly Van Auken,et al. Automatic categorization of diverse experimental information in the bioscience literature , 2012, BMC Bioinformatics.
[30] Peter McQuilton. Opportunities for text mining in the FlyBase genetic literature curation workflow , 2012, Database J. Biol. Databases Curation.
[31] Manuel C. Peitsch,et al. Semi-Automated Curation Allows Causal Network Model Building for the Quantification of Age-Dependent Plaque Progression in ApoE−/− Mouse , 2016, Gene regulation and systems biology.
[32] Fabio Rinaldi,et al. Strategies towards digital and semi-automated curation in RegulonDB , 2017, Database J. Biol. Databases Curation.
[33] Zhiyong Lu,et al. Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II , 2012, Database J. Biol. Databases Curation.
[34] Jeyakumar Natarajan,et al. Overview of the interactive task in BioCreative V , 2015, Database J. Biol. Databases Curation.
[35] K. Kemphues,et al. The C. elegans zyg-1 Gene Encodes a Regulator of Centrosome Duplication with Distinct Maternal and Paternal Roles in the Embryo , 2001, Cell.
[36] Kara Dolinski,et al. The BioGRID interaction database: 2017 update , 2016, Nucleic Acids Res..
[37] Zhiyong Lu,et al. BC4GO: a full-text corpus for the BioCreative IV GO task , 2014, Database J. Biol. Databases Curation.
[38] Raymond Y. N. Lee,et al. Building a Cell and Anatomy Ontology of Caenorhabditis Elegans , 2003, Comparative and functional genomics.
[39] Tanya Z. Berardini,et al. Building an efficient curation workflow for the Arabidopsis literature corpus , 2012, Database J. Biol. Databases Curation.
[40] Zhiyong Lu,et al. Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges , 2016, Database J. Biol. Databases Curation.
[41] Karin M. Verspoor,et al. BioC: a minimalist approach to interoperability for biomedical text processing , 2013, AMIA.