Brooks Parsimony Analysis: a valiant failure
暂无分享,去创建一个
[1] Nick Goldman,et al. MAXIMUM LIKELIHOOD INFERENCE OF PHYLOGENETIC TREES, WITH SPECIAL REFERENCE TO A POISSON PROCESS MODEL OF DNA SUBSTITUTION AND TO PARSIMONY ANALYSES , 1990 .
[2] M. Siddall. Phylogeny of the leech family Erpobdellidae (Hirudinida : Oligochaeta) , 2002 .
[3] Roderic D. M. Page,et al. QUANTITATIVE CLADISTIC BIOGEOGRAPHY: CONSTRUCTING AND COMPARING AREA CLADOGRAMS , 1988 .
[4] F. Hoffmann,et al. Tangled Trees: Phylogeny, Cospeciation, and Coevolution , 2004 .
[5] M. Siddall,et al. PHYLOGENETIC COVARIANCE PROBABILITY: CONFIDENCE AND HISTORICAL ASSOCIATIONS , 1996 .
[6] D. Brooks,et al. Parascript: Parasites and the Language of Evolution , 1994 .
[7] Wayne P. Maddison,et al. Macclade: Analysis of Phylogeny and Character Evolution/Version 3 , 1992 .
[8] Fredrik Ronquist,et al. RECONSTRUCTING THE HISTORY OF HOST‐PARASITE ASSOCIATIONS USING GENERALISED PARSIMONY , 1995, Cladistics : the international journal of the Willi Hennig Society.
[9] C. Humphries,et al. Cladistic biogeography and the art of discovery , 2002 .
[10] A. Dowling. Testing the accuracy of TreeMap and Brooks parsimony analyses of coevolutionary patterns using artificial associations , 2002 .
[11] S. Perkins,et al. A MOLECULAR PHYLOGENY OF MALARIAL PARASITES RECOVERED FROM CYTOCHROME b GENE SEQUENCES , 2002, The Journal of parasitology.
[12] J. Felsenstein. Numerical Methods for Inferring Evolutionary Trees , 1982, The Quarterly Review of Biology.
[13] Mark Ridley,et al. Phylogeny, ecology, and behavior: A research program in comparative biology , 1991 .
[14] Hidetoshi Shimodaira,et al. Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference , 1999, Molecular Biology and Evolution.
[15] Fredrik Ronquist,et al. Three‐Dimensional Cost‐Matrix Optimization and Maximum Cospeciation , 1998, Cladistics : the international journal of the Willi Hennig Society.
[16] Daniel R. Brooks,et al. HISTORICAL ECOLOGY: A NEW APPROACH TO STUDYING THE EVOLUTION OF ECOLOGICAL ASSOCIATIONS , 1985 .
[17] M. Nei,et al. The neighbor-joining method , 1987 .
[18] Daniel R. Brooks,et al. How to do BPA, really , 2001 .
[19] H. Kishino,et al. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea , 1989, Journal of Molecular Evolution.
[20] E. Hoberg,et al. Congruent and synchronic patterns in biogeography and speciation among seabirds, pinnipeds, and cestodes. , 1992, The Journal of parasitology.
[21] L. Avilan,et al. Interaction of different Leishmania mexicana morphotypes with plasminogen , 2002, Parasitology Research.
[22] Roderic D. M. Page,et al. Genes, organisms, and areas: the problem of multiple lineages , 1993 .
[23] R. O'Grady,et al. Coding Multistate Characters, with Special Reference to the Use of Parasites as Characters of their Hosts , 1987 .
[24] R. Page. Maps between trees and cladistic analysis of historical associations among genes , 1994 .
[25] Fredrik Ronquist,et al. Process and Pattern in the Evolution of Species Associations , 1990 .
[26] J. Felsenstein. Cases in which Parsimony or Compatibility Methods will be Positively Misleading , 1978 .
[27] Daniel R. Brooks,et al. Hennig's Parasitological Method: A Proposed Solution , 1981 .
[28] A. Kluge. Parsimony in vicariance biogeography : a quantitative method and a greater antillean example , 1988 .
[29] D. Kornet,et al. Regular ArticleMethods in Vicariance Biogeography: Assessment of the Implementations of Assumptions 0, 1, and 2☆ , 2000 .
[30] Roderic D. M. Page,et al. COMPONENT ANALYSIS: A VALIANT FAILURE? , 1990 .
[31] M. Charleston,et al. Jungles: a new solution to the host/parasite phylogeny reconciliation problem. , 1998, Mathematical biosciences.
[32] Roderic D. M. Page,et al. PARALLEL PHYLOGENIES: RECONSTRUCTING THE HISTORY OF HOST‐PARASITE ASSEMBLAGES , 1994 .
[33] Rob DeSalle,et al. The Widespread Colonization Island of Actinobacillus actinomycetemcomitans , 2003, Nature Genetics.
[34] D. Brooks. Macroevolutionary Comparisons Of Host And Parpsite Phylogenies , 1988 .
[35] D. Brooks,et al. Revision and phylogenetic analysis of the amphilinidea poche, 1922 (Platyhelminthes: Cercomeria: Cercomeromorpha) , 1987 .
[36] Fredrik Ronquist,et al. Parsimony analysis of coevolving species associa-tions , 2002 .
[37] Daniel R. Brooks,et al. Macroevolutionary Comparisons of Host and Parasite Phylogenies , 1988 .
[38] N. Saitou,et al. The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.
[39] R. Page,et al. Trees within trees: phylogeny and historical associations. , 1998, Trends in ecology & evolution.
[40] J. S. Rogers,et al. Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods. , 2001, Systematic biology.
[41] Diego Pol,et al. Biases in Maximum Likelihood and Parsimony: A Simulation Approach to a 10-Taxon Case , 2001 .
[42] W. Hennig. Phylogenetic Systematics , 2002 .
[43] S. Sherry,et al. Geographic origin of human mitochondrial DNA revisited , 1992 .
[44] J. Morrone,et al. IN SEARCH OF A METHOD FOR CLADISTIC BIOGEOGRAPHY: AN EMPIRICAL COMPARISON OF COMPONENT ANALYSIS, BROOKS PARSIMONY ANALYSIS, AND THREE‐AREA STATEMENTS , 1994 .
[45] Roderic D. M. Page,et al. Tangled trees : phylogeny, cospeciation, and coevolution , 2003 .
[46] J. Farris,et al. Regular ArticlePARSIMONY JACKKNIFING OUTPERFORMS NEIGHBOR-JOINING , 1996 .
[47] M. Siddall,et al. Long‐Branch Abstractions , 1999 .
[48] R. Page. Parasites, phylogeny and cospeciation , 1993 .
[49] P. Hovenkamp. Vicariance Events, not Areas, Should be Used in Biogeographical Analysis , 1997, Cladistics : the international journal of the Willi Hennig Society.
[50] Marco G. P. Van Veller,et al. Methods in Vicariance Biogeography: Assessment of the Implementations of Assumptions 0, 1, and 2 , 2000 .
[51] O. A. Sæther,et al. THE MYTH OF OBJECTIVITY—POST‐HENNIGIAN DEVIATIONS , 1986 .
[52] Daniel R. Brooks,et al. Testing the Context and Extent of Host-Parasite Coevolution , 1979 .
[53] J. Cracraft. Deep-history Biogeography: Retrieving the Historical Pattern of Evolving Continental Biotas , 1988 .
[54] Daniel R. Brooks,et al. Parsimony Analysis in Historical Biogeography and Coevolution: Methodological and Theoretical Update , 1990 .
[55] M. Siddall,et al. The AIDS Pandemic is New, but is HIVNotNew?☆☆☆ , 1997 .
[56] M. Siddall,et al. Probabilism and Phylogenetic Inference , 1997, Cladistics : the international journal of the Willi Hennig Society.
[57] David P. Mindell,et al. THE AIDS PANDEMIC IS NEW, BUT IS HIV NEW ? , 1995 .
[58] E. Hoberg,et al. Phylogeny, historical biogeography, and ecology of Anophryocephalus spp. (Eucestoda: Tetrabothriidae) among pinnipeds of the Holarctic during the late Tertiary and Pleistocene , 1992 .
[59] J. Huelsenbeck,et al. SUCCESS OF PHYLOGENETIC METHODS IN THE FOUR-TAXON CASE , 1993 .