Cross-sequence interactions between human and rat islet amyloid polypeptides.

Human islet amyloid polypeptide (hIAPP) can assemble into toxic oligomers and fibrils, which are associated with cell degeneration and the pathogenesis of type 2 diabetes. Cross-interaction of hIAPP with rat IAPP (rIAPP)--a non-amyloidogenic peptide with high sequence similarity to hIAPP--might influence the aggregation and toxicity of hIAPP. However, the exact role of rIAPP in hIAPP aggregation and toxicity still remains unclear. In this work, we investigated the effect of cross-sequence interactions between full-length hIAPP(1-37) and rIAPP(1-37) on hybrid amyloid structures, aggregation kinetics, and cell toxicity using combined computational and experimental approaches. Experimental results indicate a contrasting role of rIAPP in hIAPP aggregation, in which rIAPP initially inhibits the early aggregation and nuclei formation of hIAPP, but hIAPP seeds can also recruit both hIAPP and rIAPP to form more hybrid fibrils, thus promoting amyloid fibrillation ultimately. The coincubation of hIAPP and rIAPP also decreases cell viability, presumably due to the formation of more toxic hybrid oligomers at the prolonged lag phase. Comparative MD simulations confirm that the cross-sequence interactions between hIAPP and rIAPP stabilize β-sheet structure and thus likely promote their fibrillization. This work provides valuable insights into a critical role of cross-amyloid interactions in protein aggregation.

[1]  Ruth Nussinov,et al.  Cross-seeding and Conformational Selection between Three- and Four-repeat Human Tau Proteins , 2012, The Journal of Biological Chemistry.

[2]  Normand Mousseau,et al.  Thermodynamics and dynamics of amyloid peptide oligomerization are sequence dependent , 2009, Proteins.

[3]  Tetsuaki Arai,et al.  Abeta and tau form soluble complexes that may promote self aggregation of both into the insoluble forms observed in Alzheimer's disease. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[4]  Roland Winter,et al.  Cross-amyloid interaction of Aβ and IAPP at lipid membranes. , 2012, Angewandte Chemie.

[5]  A. Kapurniotu,et al.  Design of a mimic of nonamyloidogenic and bioactive human islet amyloid polypeptide (IAPP) as nanomolar affinity inhibitor of IAPP cytotoxic fibrillogenesis , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[6]  H. C. Andersen Rattle: A “velocity” version of the shake algorithm for molecular dynamics calculations , 1983 .

[7]  R. Nussinov,et al.  Induced Fit, Conformational Selection and Independent Dynamic Segments: an Extended View of Binding Events Opinion , 2022 .

[8]  H. Nieznańska,et al.  Cross-seeding of fibrils from two types of insulin induces new amyloid strains. , 2012, Biochemistry.

[9]  R. Winter,et al.  Suppression of IAPP fibrillation at anionic lipid membranes via IAPP-derived amyloid inhibitors and insulin. , 2010, Biophysical chemistry.

[10]  Guizhao Liang,et al.  Structural polymorphism of human islet amyloid polypeptide (hIAPP) oligomers highlights the importance of interfacial residue interactions. , 2011, Biomacromolecules.

[11]  M. Biancalana,et al.  Molecular mechanism of Thioflavin-T binding to amyloid fibrils. , 2010, Biochimica et biophysica acta.

[12]  Joan-Emma Shea,et al.  Human islet amyloid polypeptide monomers form ordered beta-hairpins: a possible direct amyloidogenic precursor. , 2009, Journal of the American Chemical Society.

[13]  R. Nussinov,et al.  Folding funnels and binding mechanisms. , 1999, Protein engineering.

[14]  K Schulten,et al.  VMD: visual molecular dynamics. , 1996, Journal of molecular graphics.

[15]  Yuguang Mu,et al.  The Molecular Basis of Distinct Aggregation Pathways of Islet Amyloid Polypeptide* , 2010, The Journal of Biological Chemistry.

[16]  R. Nussinov,et al.  Polymorphism in Alzheimer Aβ Amyloid Organization Reflects Conformational Selection in a Rugged Energy Landscape , 2010, Chemical reviews.

[17]  Laxmikant V. Kale,et al.  NAMD2: Greater Scalability for Parallel Molecular Dynamics , 1999 .

[18]  P. Fraser,et al.  Amyloid inhibitors enhance survival of cultured human islets. , 2009, Biochimica et biophysica acta.

[19]  Claudio Soto,et al.  β-sheet breaker peptides inhibit fibrillogenesis in a rat brain model of amyloidosis: Implications for Alzheimer's therapy , 1998, Nature Medicine.

[20]  Richard Leapman,et al.  Peptide conformation and supramolecular organization in amylin fibrils: constraints from solid-state NMR. , 2007, Biochemistry.

[21]  Ayyalusamy Ramamoorthy,et al.  Membrane disruption and early events in the aggregation of the diabetes related peptide IAPP from a molecular perspective. , 2012, Accounts of chemical research.

[22]  P. Fraser,et al.  Design of peptide-based inhibitors of human islet amyloid polypeptide fibrillogenesis. , 2002, Journal of molecular biology.

[23]  Ruth Nussinov,et al.  Selective molecular recognition in amyloid growth and transmission and cross-species barriers. , 2012, Journal of molecular biology.

[24]  C. Dobson,et al.  Protein misfolding, functional amyloid, and human disease. , 2006, Annual review of biochemistry.

[25]  S. Radford,et al.  Ion Mobility Spectrometry–Mass Spectrometry Defines the Oligomeric Intermediates in Amylin Amyloid Formation and the Mode of Action of Inhibitors , 2013, Journal of the American Chemical Society.

[26]  Ruth Nussinov,et al.  Enzyme dynamics point to stepwise conformational selection in catalysis. , 2010, Current opinion in chemical biology.

[27]  M. Nicolls,et al.  The clinical and biological relationship between Type II diabetes mellitus and Alzheimer's disease. , 2004, Current Alzheimer research.

[28]  Jie Zheng,et al.  Tanshinones inhibit amyloid aggregation by amyloid-β peptide, disaggregate amyloid fibrils, and protect cultured cells. , 2013, ACS chemical neuroscience.

[29]  John Z H Zhang,et al.  Molecular dynamics simulation study on the molecular structures of the amylin fibril models. , 2012, The journal of physical chemistry. B.

[30]  G. Westermark,et al.  Inhibition of hIAPP amyloid-fibril formation and apoptotic cell death by a designed hIAPP amyloid- core-containing hexapeptide. , 2005, Chemistry & biology.

[31]  Guizhao Liang,et al.  Heterogeneous triangular structures of human islet amyloid polypeptide (amylin) with internal hydrophobic cavity and external wrapping morphology reveal the polymorphic nature of amyloid fibrils. , 2011, Biomacromolecules.

[32]  Joan-Emma Shea,et al.  The amyloid formation mechanism in human IAPP: dimers have β-strand monomer-monomer interfaces. , 2011, Journal of the American Chemical Society.

[33]  Ayyalusamy Ramamoorthy,et al.  Misfolded Proteins in Alzheimer′s Disease and Type II Diabetes , 2012 .

[34]  Normand Mousseau,et al.  Structure and thermodynamics of amylin dimer studied by Hamiltonian-temperature replica exchange molecular dynamics simulations. , 2011, The journal of physical chemistry. B.

[35]  Guizhao Liang,et al.  Comparative molecular dynamics study of human islet amyloid polypeptide (IAPP) and rat IAPP oligomers. , 2013, Biochemistry.

[36]  Per Westermark,et al.  Islet amyloid polypeptide, islet amyloid, and diabetes mellitus. , 2011, Physiological reviews.

[37]  Fanling Meng,et al.  The ability of rodent islet amyloid polypeptide to inhibit amyloid formation by human islet amyloid polypeptide has important implications for the mechanism of amyloid formation and the design of inhibitors. , 2010, Biochemistry.

[38]  Peter Marek,et al.  Two-dimensional infrared spectroscopy reveals the complex behavior of an amyloid fibril inhibitor , 2012, Nature chemistry.

[39]  Bruce A. Yankner,et al.  Pancreatic islet cell toxicity of amylin associated with type-2 diabetes mellitus , 1994, Nature.

[40]  Joan-Emma Shea,et al.  Structural Similarities and Differences between Amyloidogenic and Non-Amyloidogenic Islet Amyloid Polypeptide (IAPP) Sequences and Implications for the Dual Physiological and Pathological Activities of These Peptides , 2013, PLoS Comput. Biol..

[41]  U. Aebi,et al.  Full-length rat amylin forms fibrils following substitution of single residues from human amylin. , 2003, Journal of molecular biology.

[42]  P. Fraser,et al.  Identification of minimal peptide sequences in the (8-20) domain of human islet amyloid polypeptide involved in fibrillogenesis. , 2003, Journal of structural biology.

[43]  Sharon Gilead,et al.  Inhibition of amyloid fibril formation by peptide analogues modified with alpha-aminoisobutyric acid. , 2004, Angewandte Chemie.

[44]  C. Betsholtz,et al.  Islet amyloid polypeptide: pinpointing amino acid residues linked to amyloid fibril formation. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[45]  D. W. Hayden,et al.  Amyloid fibrils in human insulinoma and islets of Langerhans of the diabetic cat are derived from a neuropeptide-like protein also present in normal islet cells. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[46]  Joan-Emma Shea,et al.  β-sheet propensity controls the kinetic pathways and morphologies of seeded peptide aggregation. , 2012, The Journal of chemical physics.

[47]  Alexander D. MacKerell,et al.  All-atom empirical potential for molecular modeling and dynamics studies of proteins. , 1998, The journal of physical chemistry. B.