Understanding artificial mouse-microbiome heterogeneity and six actionable themes to increase study power
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Jun Miyoshi | Erika L. Moen | Abigail R. Basson | Alexandria LaSalla | Gretchen Lam | Danielle Kulpins | Mark S. Sundrud | Sanja Ilic | Betty Theriault | Fabio Cominelli | Alexander Rodriguez-Palacios | J. Miyoshi | A. Basson | F. Cominelli | Sanja Ilic | B. Theriault | A. Rodriguez-Palacios | Alexandria Lasalla | Gretchen A Lam | Danielle Kulpins
[1] I. Cuthill,et al. Reporting : The ARRIVE Guidelines for Reporting Animal Research , 2010 .
[2] Sanja Ilic,et al. Institutional protocols for the oral administration (gavage) of chemicals and microscopic microbial communities to mice: Analytical consensus , 2019, Experimental biology and medicine.
[3] Robert W. Li,et al. Inhibition of Tumor Growth by Dietary Indole-3-Carbinol in a Prostate Cancer Xenograft Model May Be Associated with Disrupted Gut Microbial Interactions , 2019, Nutrients.
[4] A James O'Malley,et al. Analyzing Clustered Data: Why and How to Account for Multiple Observations Nested within a Study Participant? , 2016, PloS one.
[5] J. Buchert,et al. Hypocholesterolemic Effect of the Lignin-Rich Insoluble Residue of Brewer's Spent Grain in Mice Fed a High-Fat Diet. , 2018, Journal of agricultural and food chemistry.
[6] Kenichi Tanabe,et al. Dietary Fructooligosaccharide and Glucomannan Alter Gut Microbiota and Improve Bone Metabolism in Senescence-Accelerated Mouse. , 2019, Journal of agricultural and food chemistry.
[7] S. Perrin. Preclinical research: Make mouse studies work , 2014, Nature.
[8] A. Neyrinck,et al. A Preventive Prebiotic Supplementation Improves the Sweet Taste Perception in Diet-Induced Obese Mice , 2019, Nutrients.
[9] A. Ericsson,et al. Manipulating the Gut Microbiota: Methods and Challenges. , 2015, ILAR journal.
[10] I. Amit,et al. Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations , 2016, Cell.
[11] Rupert Palme,et al. Mixed-strain housing for female C57BL/6, DBA/2, and BALB/c mice: validating a split-plot design that promotes refinement and reduction , 2016, BMC Medical Research Methodology.
[12] Kerstin Pingel,et al. 50 Years of Image Analysis , 2012 .
[13] C. Ashby,et al. Immune tolerance attenuates gut dysbiosis, dysregulated uterine gene expression and high-fat diet potentiated preterm birth in mice. , 2019, American journal of obstetrics and gynecology.
[14] T. Liu,et al. A More Robust Gut Microbiota in Calorie-Restricted Mice Is Associated with Attenuated Intestinal Injury Caused by the Chemotherapy Drug Cyclophosphamide , 2019, mBio.
[15] Ziyad Mahfoud,et al. What Is an Intracluster Correlation Coefficient? Crucial Concepts for Primary Care Researchers , 2004, The Annals of Family Medicine.
[16] S. Lee,et al. Characterisation of the antibacterial properties of the recombinant phage endolysins AP50-31 and LysB4 as potent bactericidal agents against Bacillus anthracis , 2018, Scientific Reports.
[17] E. Elinav,et al. Microbiome diurnal rhythmicity and its impact on host physiology and disease risk , 2019, EMBO reports.
[18] D. Hou,et al. Modulation of Gut Microbiota by Lonicera caerulea L. Berry Polyphenols in a Mouse Model of Fatty Liver Induced by High Fat Diet , 2018, Molecules.
[19] Yufei Liu,et al. High dietary fat intake lowers serum equol concentration and promotes prostate carcinogenesis in a transgenic mouse prostate model , 2019, Nutrition & Metabolism.
[20] S. Kersten,et al. Loss of angiopoietin-like 4 (ANGPTL4) in mice with diet-induced obesity uncouples visceral obesity from glucose intolerance partly via the gut microbiota , 2018, Diabetologia.
[21] Jessaca K. Spybrook,et al. Intraclass Correlation Coefficients for Designing Cluster-Randomized Trials in Sub-Saharan Africa Education , 2016, Evaluation review.
[22] Huawei Zeng,et al. Colonic aberrant crypt formation accompanies an increase of opportunistic pathogenic bacteria in C57BL/6 mice fed a high-fat diet. , 2018, The Journal of nutritional biochemistry.
[23] J. Antoun,et al. Role of Bile Acids and GLP-1 in Mediating the Metabolic Improvements of Bariatric Surgery. , 2019, Gastroenterology.
[24] A. Fodor,et al. Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model , 2013, The ISME Journal.
[25] Sally Galbraith,et al. A Study of Clustered Data and Approaches to Its Analysis , 2010, The Journal of Neuroscience.
[26] Herbert Yu,et al. Food withdrawal alters the gut microbiota and metabolome in mice , 2018, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[27] J. Raes,et al. Heterogeneity of the gut microbiome in mice: guidelines for optimizing experimental design , 2015, FEMS microbiology reviews.
[28] A. M. Eren,et al. Minimizing confounders and increasing data quality in murine models for studies of the gut microbiome , 2018, PeerJ.
[29] Edgar Erdfelder,et al. G*Power 3: A flexible statistical power analysis program for the social, behavioral, and biomedical sciences , 2007, Behavior research methods.
[30] F. Collins,et al. Policy: NIH plans to enhance reproducibility , 2014, Nature.
[31] A. Ericsson,et al. Variable Colonization after Reciprocal Fecal Microbiota Transfer between Mice with Low and High Richness Microbiota , 2017, Front. Microbiol..
[32] Miaomiao Teng,et al. In utero and lactational exposure to BDE-47 promotes obesity development in mouse offspring fed a high-fat diet: impaired lipid metabolism and intestinal dysbiosis , 2018, Archives of Toxicology.
[33] N. Seeram,et al. Jamun (Eugenia jambolana Lam.) Fruit Extract Prevents Obesity by Modulating the Gut Microbiome in High-Fat-Diet-Fed Mice. , 2019, Molecular nutrition & food research.
[34] D. Pearl. Making the most of clustered data in laboratory animal research using multi-level models. , 2014, ILAR journal.
[35] Hong Wang,et al. Effects of Taste Signaling Protein Abolishment on Gut Inflammation in an Inflammatory Bowel Disease Mouse Model. , 2018, Journal of visualized experiments : JoVE.
[36] F. J. van der Staay,et al. Individual housing of mice — Impact on behaviour and stress responses , 2009, Physiology & Behavior.
[37] K. McCoy,et al. Gut Microbiome Standardization in Control and Experimental Mice , 2017, Current protocols in immunology.
[38] S. Zeissig,et al. Analysis of factors contributing to variation in the C57BL/6J fecal microbiota across German animal facilities. , 2016, International journal of medical microbiology : IJMM.
[39] D. Heisey,et al. The Abuse of Power , 2001 .
[40] K. Aizawa,et al. Tomato Powder Inhibits Hepatic Steatosis and Inflammation Potentially Through Restoring SIRT1 Activity and Adiponectin Function Independent of Carotenoid Cleavage Enzymes in Mice , 2018, Molecular nutrition & food research.
[41] N. Vashi,et al. Text recycling: Self-plagiarism in scientific writing☆☆☆ , 2018, International journal of women's dermatology.
[42] M. Ghannoum,et al. Clinical Effects of Gamma-Radiation-Resistant Aspergillus sydowii on Germ-Free Mice Immunologically Prone to Inflammatory Bowel Disease , 2016, Journal of pathogens.
[43] S. Martin,et al. Veterinary Epidemiologic Research , 2009 .
[44] F. Cominelli,et al. Stereomicroscopy and 3D-target myeloperoxidase intestinal phenotyping following a fecal flora homogenization protocol , 2015 .
[45] M. Ghannoum,et al. The Artificial Sweetener Splenda Promotes Gut Proteobacteria, Dysbiosis, and Myeloperoxidase Reactivity in Crohn’s Disease–Like Ileitis , 2018, Inflammatory bowel diseases.
[46] F. Cominelli,et al. ‘Cyclical Bias’ in Microbiome Research Revealed by A Portable Germ-Free Housing System Using Nested Isolation , 2018, Scientific Reports.
[47] Liping Zhao,et al. Predominant gut Lactobacillus murinus strain mediates anti-inflammaging effects in calorie-restricted mice , 2018, Microbiome.
[48] M K Slack,et al. Establishing the internal and external validity of experimental studies. , 2001, American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists.
[49] J. Ioannidis. Why Most Published Research Findings Are False , 2005, PLoS medicine.
[50] S. Givan,et al. The influence of caging, bedding, and diet on the composition of the microbiota in different regions of the mouse gut , 2018, Scientific Reports.
[51] Denise N. Bronner,et al. Endogenous Enterobacteriaceae underlie variation in susceptibility to Salmonella infection , 2019, Nature Microbiology.
[52] M. Leclerc,et al. Dietary Protein Intake Level Modulates Mucosal Healing and Mucosa-Adherent Microbiota in Mouse Model of Colitis , 2019, Nutrients.
[53] A. Ericsson,et al. Microbiota and reproducibility of rodent models , 2017, Lab Animal.
[54] Miaomiao Teng,et al. Effects of triphenyl phosphate exposure during fetal development on obesity and metabolic dysfunctions in adult mice: Impaired lipid metabolism and intestinal dysbiosis. , 2019, Environmental pollution.
[55] D. Philpott,et al. Comparison of Co-housing and Littermate Methods for Microbiota Standardization in Mouse Models. , 2019, Cell reports.
[56] Janita Raskala,et al. Methods and challenges , 2014 .
[57] Yu-Chun Lin,et al. A combination of Lactobacillus mali APS1 and dieting improved the efficacy of obesity treatment via manipulating gut microbiome in mice , 2018, Scientific Reports.
[58] S. Sørensen,et al. Gut Microbiota Composition Is Correlated to Grid Floor Induced Stress and Behavior in the BALB/c Mouse , 2012, PloS one.
[59] G. Z. Rocha,et al. Helminth infection in mice improves insulin sensitivity via modulation of gut microbiota and fatty acid metabolism , 2018, Pharmacological research.
[60] F. Collins,et al. NIH plans to enhance reproducibility , 2014 .
[61] D. Hou,et al. Preventive Effects and Mechanisms of Garlic on Dyslipidemia and Gut Microbiome Dysbiosis , 2019, Nutrients.
[62] T. DeSantis,et al. Maternal metabolic, immune, and microbial systems in late pregnancy vary with malnutrition in mice† , 2018, Biology of Reproduction.
[63] E. Erdfelder,et al. Statistical power analyses using G*Power 3.1: Tests for correlation and regression analyses , 2009, Behavior research methods.
[64] Kevin W Eliceiri,et al. NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.
[65] T. Hughes,et al. Physiological mechanisms of sustained fumagillin-induced weight loss. , 2018, JCI insight.
[66] C. Lutz,et al. Acclimation and Institutionalization of the Mouse Microbiota Following Transportation , 2018, Front. Microbiol..
[67] Nicholas D. Youngblut,et al. Human salivary amylase gene copy number impacts oral and gut microbiomes , 2018, bioRxiv.
[68] G. Perozzi,et al. Supplementation with dairy matrices impacts on homocysteine levels and gut microbiota composition of hyperhomocysteinemic mice , 2020, European journal of nutrition.
[69] R. Dantzer,et al. Social factors and individual vulnerability to chronic stress exposure , 2005, Neuroscience & Biobehavioral Reviews.
[70] Douglas G Altman,et al. Improving bioscience research reporting: the ARRIVE guidelines for reporting animal research. , 2012, Veterinary clinical pathology.
[71] David S. Moore,et al. Undergraduate Programs and the Future of Academic Statistics , 2001 .
[72] O. Franco,et al. Limited Effects of Low-to-Moderate Aerobic Exercise on the Gut Microbiota of Mice Subjected to a High-Fat Diet , 2019, Nutrients.
[73] K. C. K. Lloyd,et al. Development of outbred CD1 mouse colonies with distinct standardized gut microbiota profiles for use in complex microbiota targeted studies , 2018, Scientific Reports.
[74] V. Nerurkar,et al. Momordica charantia (bitter melon) modulates adipose tissue inflammasome gene expression and adipose-gut inflammatory cross talk in high-fat diet (HFD)-fed mice. , 2019, The Journal of nutritional biochemistry.
[75] J. Ferreira,et al. Internal and external validity: can you apply research study results to your patients? , 2018, Jornal brasileiro de pneumologia : publicacao oficial da Sociedade Brasileira de Pneumologia e Tisilogia.
[76] J. Miyoshi,et al. Small Intestine Microbiota Regulate Host Digestive and Absorptive Adaptive Responses to Dietary Lipids. , 2018, Cell host & microbe.
[77] Y. Ishimi,et al. Resistant Starch Attenuates Bone Loss in Ovariectomised Mice by Regulating the Intestinal Microbiota and Bone-Marrow Inflammation , 2019, Nutrients.
[78] M. Lim,et al. Effect of raw potato starch on the gut microbiome and metabolome in mice. , 2019, International journal of biological macromolecules.
[79] J. Barnett,et al. H2Oh No! The importance of reporting your water source in your in vivo microbiome studies , 2018, Gut microbes.
[80] D. Younger,et al. Research Methods in Epidemiology. , 2016, Neurologic clinics.
[81] T. Weir,et al. Suppression of gut dysbiosis reverses Western diet-induced vascular dysfunction. , 2018, American journal of physiology. Endocrinology and metabolism.
[82] Alan L. Hutchison,et al. Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism. , 2015, Cell host & microbe.