An XML repository for molecular sequence data

The emergence of the Extensible Markup Language (XML) as a new standard for data representation and exchange on the World Wide Web has created a new information revolution. Several proposals have been made to formulate molecular sequences in XML, however none of them mentioned the efficient storage and management of the resultant XML sequence data. This paper addresses some implementation issues of an XML repository for molecular sequence data.

[1]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[2]  Jennifer Widom,et al.  The Lorel query language for semistructured data , 1997, International Journal on Digital Libraries.

[3]  David Fenyö,et al.  The Biopolymer Markup Language , 1999, Bioinform..

[4]  Dan Suciu,et al.  A query language for a Web-site management system , 1997, SGMD.

[5]  Dan Suciu,et al.  STRUDEL: a Web site management system , 1997, SIGMOD '97.

[6]  Dan Suciu,et al.  Adding Structure to Unstructured Data , 1997, ICDT.

[7]  Alberto O. Mendelzon,et al.  Querying the World Wide Web , 1996, Fourth International Conference on Parallel and Distributed Information Systems.

[8]  Dan Suciu,et al.  A query language and optimization techniques for unstructured data , 1996, SIGMOD '96.

[9]  Roy Goldman,et al.  DataGuides: Enabling Query Formulation and Optimization in Semistructured Databases , 1997, VLDB.

[10]  S. Altschul,et al.  Issues in searching molecular sequence databases , 1994, Nature Genetics.

[11]  Serge Abiteboul,et al.  Querying Semi-Structured Data , 1997, Encyclopedia of Database Systems.

[12]  Jennifer Widom,et al.  Object exchange across heterogeneous information sources , 1995, Proceedings of the Eleventh International Conference on Data Engineering.

[13]  Jennifer Widom,et al.  Querying Semistructured Heterogeneous Information , 1997, J. Syst. Integr..

[14]  Roy Goldman,et al.  Lore: a database management system for semistructured data , 1997, SGMD.