Magnetically sensitive light-induced reactions in cryptochrome are consistent with its proposed role as a magnetoreceptor

Among the biological phenomena that fall within the emerging field of “quantum biology” is the suggestion that magnetically sensitive chemical reactions are responsible for the magnetic compass of migratory birds. It has been proposed that transient radical pairs are formed by photo-induced electron transfer reactions in cryptochrome proteins and that their coherent spin dynamics are influenced by the geomagnetic field leading to changes in the quantum yield of the signaling state of the protein. Despite a variety of supporting evidence, it is still not clear whether cryptochromes have the properties required to respond to magnetic interactions orders of magnitude weaker than the thermal energy, kBT. Here we demonstrate that the kinetics and quantum yields of photo-induced flavin—tryptophan radical pairs in cryptochrome are indeed magnetically sensitive. The mechanistic origin of the magnetic field effect is clarified, its dependence on the strength of the magnetic field measured, and the rates of relevant spin-dependent, spin-independent, and spin-decoherence processes determined. We argue that cryptochrome is fit for purpose as a chemical magnetoreceptor.

[1]  B. Liu,et al.  Searching for a photocycle of the cryptochrome photoreceptors. , 2010, Current opinion in plant biology.

[2]  V. Rubio,et al.  N-Terminal Domain–Mediated Homodimerization Is Required for Photoreceptor Activity of Arabidopsis CRYPTOCHROME 1 , 2005, The Plant Cell Online.

[3]  P. Hore,et al.  Chemical magnetoreception in birds: The radical pair mechanism , 2009, Proceedings of the National Academy of Sciences.

[4]  R. Haberkorn Density matrix description of spin-selective radical pair reactions , 1976 .

[5]  Jonathan A. Jones,et al.  Reply to Comment on ‘Spin-selective reactions of radical pairs act as quantum measurements’ , 2010, 1002.2377.

[6]  Xuanming Liu,et al.  Blue Light-Dependent Interaction of CRY2 with SPA1 Regulates COP1 activity and Floral Initiation in Arabidopsis , 2011, Current Biology.

[7]  A. Bacher,et al.  Magnetic-field effect on the photoactivation reaction of Escherichia coli DNA photolyase , 2008, Proceedings of the National Academy of Sciences.

[8]  E. Getzoff,et al.  Light-induced conformational changes in full-length Arabidopsis thaliana cryptochrome. , 2011, Journal of molecular biology.

[9]  A. Zuckerman,et al.  IARC Monographs on the Evaluation of Carcinogenic Risks to Humans , 1995, IARC monographs on the evaluation of carcinogenic risks to humans.

[10]  S Greenland,et al.  A Pooled Analysis of Magnetic Fields, Wire Codes, and Childhood Leukemia , 2000, Epidemiology.

[11]  C. Timmel,et al.  Effects of weak magnetic fields on free radical recombination reactions , 1998 .

[12]  M. Byrdin,et al.  Intraprotein electron transfer and proton dynamics during photoactivation of DNA photolyase from E. coli: review and new insights from an "inverse" deuterium isotope effect. , 2004, Biochimica et biophysica acta.

[13]  Christiane R Timmel,et al.  Determination of radical re-encounter probability distributions from magnetic field effects on reaction yields. , 2007, Journal of the American Chemical Society.

[14]  A. Sancar,et al.  Photochemistry and Photobiology of Cryptochrome Blue-light Photopigments: The Search for a Photocycle , 2005, Photochemistry and photobiology.

[15]  C. Timmel,et al.  The effects of weak magnetic fields on radical recombination reactions in micelles , 2000, International journal of radiation biology.

[16]  T. Ritz,et al.  The cryptochromes: blue light photoreceptors in plants and animals. , 2011, Annual review of plant biology.

[17]  E. Knapp,et al.  Energetics of radical transfer in DNA photolyase. , 2002, Journal of the American Chemical Society.

[18]  E. Getzoff,et al.  Direct observation of a photoinduced radical pair in a cryptochrome blue-light photoreceptor. , 2009, Angewandte Chemie.

[19]  A. Weller,et al.  A quantitative interpretation of the magnetic field effect on hyperfine-coupling-induced triplet fromation from radical ion pairs , 1983 .

[20]  Markus Mueller,et al.  Novel ATP-binding and autophosphorylation activity associated with Arabidopsis and human cryptochrome-1. , 2003, European journal of biochemistry.

[21]  K. Schulten,et al.  A model for photoreceptor-based magnetoreception in birds. , 2000, Biophysical journal.

[22]  V. Bagryansky,et al.  Quantum Beats in Radical Pairs , 2007 .

[23]  J. Morton,et al.  Sustained quantum coherence and entanglement in the avian compass. , 2009, Physical review letters.

[24]  M Feychting,et al.  A pooled analysis of magnetic fields and childhood leukaemia , 2000, British Journal of Cancer.

[25]  A. Sancar,et al.  Active site of DNA photolyase: tryptophan-306 is the intrinsic hydrogen atom donor essential for flavin radical photoreduction and DNA repair in vitro. , 1991, Biochemistry.

[26]  M. Goldman Formal theory of spin--lattice relaxation. , 2001, Journal of magnetic resonance.

[27]  A. Sancar Structure and Function of Photolyase and in Vivo Enzymology: 50th Anniversary* , 2008, Journal of Biological Chemistry.

[28]  A. Cashmore,et al.  HY4 gene of A. thaliana encodes a protein with characteristics of a blue-light photoreceptor , 1993, Nature.

[29]  M. Byrdin,et al.  Reaction mechanisms of DNA photolyase. , 2010, Current opinion in structural biology.

[30]  T. Arai,et al.  Effect of Coulomb Interaction on the Dynamics of the Radical Pair in the System of Flavin Mononucleotide and Hen Egg-White Lysozyme (HEWL) Studied by a Magnetic Field Effect , 2003 .

[31]  B. Brocklehurst Spin correlation in the geminate recombination of radical ions in hydrocarbons. Part 1.—Theory of the magnetic field effect , 1976 .

[32]  A. Sancar,et al.  Origin of the Transient Electron Paramagnetic Resonance Signals in DNA Photolyase , 1999 .

[33]  J. Bouly,et al.  Light-induced Electron Transfer in Arabidopsis Cryptochrome-1 Correlates with in Vivo Function* , 2005, Journal of Biological Chemistry.

[34]  M. Elstner,et al.  Nonadiabatic QM/MM simulations of fast charge transfer in Escherichia coli DNA photolyase. , 2011, The journal of physical chemistry. B.

[35]  B. Veyret,et al.  ELF magnetic fields: animal studies, mechanisms of action. , 2011, Progress in biophysics and molecular biology.

[36]  K. Schulten,et al.  Probing the dynamics of a polymer with paramagnetic end groups by magnetic fields , 1986 .

[37]  S. Weber Light-driven enzymatic catalysis of DNA repair: a review of recent biophysical studies on photolyase. , 2005, Biochimica et biophysica acta.

[38]  Joseph L. Kirschvink,et al.  Biophysics of magnetic orientation: strengthening the interface between theory and experimental design , 2010, Journal of The Royal Society Interface.

[39]  T. Langenbacher,et al.  Microsecond light-induced proton transfer to flavin in the blue light sensor plant cryptochrome. , 2009, Journal of the American Chemical Society.

[40]  P. Hore,et al.  Role of exchange and dipolar interactions in the radical pair model of the avian magnetic compass. , 2008, Biophysical journal.

[41]  T. Steinbrecher,et al.  The thermodynamics of charge transfer in DNA photolyase: using thermodynamic integration calculations to analyse the kinetics of electron transfer reactions. , 2010, Physical chemistry chemical physics : PCCP.

[42]  E. Getzoff,et al.  Origin of light-induced spin-correlated radical pairs in cryptochrome. , 2010, The journal of physical chemistry. B.

[43]  Robert Kaptein,et al.  Chemically induced dynamic nuclear polarization II : (Relation with anomalous ESR spectra) , 1969 .

[44]  T. Todo,et al.  Photoactivation of the flavin cofactor in Xenopus laevis (6–4) photolyase: Observation of a transient tyrosyl radical by time-resolved electron paramagnetic resonance , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[45]  Klaus Schulten,et al.  A Biomagnetic Sensory Mechanism Based on Magnetic Field Modulated Coherent Electron Spin Motion , 1978 .

[46]  R. Bittl,et al.  The Signaling State of Arabidopsis Cryptochrome 2 Contains Flavin Semiquinone* , 2007, Journal of Biological Chemistry.

[47]  C. Rodgers Magnetic field effects in chemical systems , 2009 .

[48]  A. Eker,et al.  Intraprotein electron transfer between tyrosine and tryptophan in DNA photolyase from Anacystis nidulans. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[49]  A. B. Reddy,et al.  Circadian clocks: neural and peripheral pacemakers that impact upon the cell division cycle. , 2005, Mutation research.

[50]  J. Deisenhofer,et al.  Crystal structure of DNA photolyase from Escherichia coli. , 1995, Science.

[51]  Henrik Mouritsen,et al.  Cryptochromes—a potential magnetoreceptor: what do we know and what do we want to know? , 2010, Journal of The Royal Society Interface.

[52]  I. Kuprov,et al.  Spinach A Software Library for Simulation of Spin Dynamics in Large Spin Systems , 2012 .

[53]  Filip Vandenbussche,et al.  Cryptochrome Blue Light Photoreceptors Are Activated through Interconversion of Flavin Redox States* , 2007, Journal of Biological Chemistry.

[54]  Baldissera Giovani,et al.  Light-induced electron transfer in a cryptochrome blue-light photoreceptor , 2003, Nature Structural Biology.

[55]  T. Arai,et al.  The spin mixing process of a radical pair in low magnetic field observed by transient absorption detected nanosecond pulsed magnetic field effect. , 2006, The journal of physical chemistry. A.

[56]  I. Kuprov Diagonalization-free implementation of spin relaxation theory for large spin systems. , 2010, Journal of magnetic resonance (San Diego, Calif. 1997 : Print).

[57]  Chad A Brautigam,et al.  Structure of the photolyase-like domain of cryptochrome 1 from Arabidopsis thaliana. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[58]  R. Kaptein,et al.  Proton nuclear magnetic resonance assignments and surface accessibility of Tryptophan residues in lysozyme using photochemically induced dynamic nuclear polarization spectroscopy. , 1983, Biochemistry.

[59]  A. Shushin The effect of the spin exchange interaction on SNP and RYDMR spectra of geminate radical pairs , 1991 .

[60]  A. Bacher,et al.  Light‐induced reactions of Escherichia coli DNA photolyase monitored by Fourier transform infrared spectroscopy , 2005, The FEBS journal.