Contributions of the LPPVK Motif of the Iron-Sulfur Template Protein IscU to Interactions with the Hsc66-Hsc20 Chaperone System*

Hsc66 (HscA) and Hsc20 (HscB) from Escherichia coli comprise a specialized chaperone system that selectively binds the iron-sulfur cluster template protein IscU. Hsc66 interacts with peptides corresponding to a discrete region of IscU including residues 99–103 (LPPVK), and a peptide containing residues 98–106 stimulates Hsc66 ATPase activity in a manner similar to IscU. To determine the relative contributions of individual residues in the LPPVK motif to Hsc66 binding and regulation, we have carried out an alanine mutagenesis scan of this motif in the Glu98–Cys106 peptide and the IscU protein. Alanine substitutions in the Glu98–Cys106 peptide resulted in decreased ATPase stimulation (2–10-fold) because of reduced binding affinity, with peptide(P101A) eliciting <10% of the parent peptide stimulation. Alanine substitutions in the IscU protein also revealed lower activities resulting from decreased apparent binding affinity, with the greatest changes in Km observed for the Pro101 (77-fold), Val102 (4-fold), and Lys103 (15-fold) mutants. Calorimetric studies of the binding of IscU mutants to the Hsc66·ADP complex showed that the P101A and K103A mutants also exhibit decreased binding affinity for the ADP-bound state. When ATPase stimulatory activity was assayed in the presence of the co-chaperone Hsc20, each of the mutants displayed enhanced binding affinity, but the P101A and V102A mutants exhibited decreased ability to maximally simulate Hsc66 ATPase. A charge mutant containing the motif sequence of NifU, IscU(V102E), did not bind the ATP or ADP states of Hsc66 but did bind Hsc20 and weakly stimulated Hsc66 ATPase in the presence of the co-chaperone. These results indicate that residues in the LPPVK motif are important for IscU interactions with Hsc66 but not for the ability of Hsc20 to target IscU to Hsc66. The results are discussed in the context of a structural model based on the crystallographic structure of the DnaK peptide-binding domain.

[1]  T. Rapoport,et al.  J proteins catalytically activate Hsp70 molecules to trap a wide range of peptide sequences. , 1998, Molecular cell.

[2]  J. Silberg,et al.  Hsc66 Substrate Specificity Is Directed toward a Discrete Region of the Iron-Sulfur Cluster Template Protein IscU* , 2002, The Journal of Biological Chemistry.

[3]  J. Silberg,et al.  The Fe/S Assembly Protein IscU Behaves as a Substrate for the Molecular Chaperone Hsc66 from Escherichia coli * , 2001, The Journal of Biological Chemistry.

[4]  Hong Wang,et al.  High-resolution solution structure of the 18 kDa substrate-binding domain of the mammalian chaperone protein Hsc70. , 1999, Journal of molecular biology.

[5]  Bernd Bukau,et al.  Multistep mechanism of substrate binding determines chaperone activity of Hsp70 , 2000, Nature Structural Biology.

[6]  J. Silberg,et al.  Interaction of the iron-sulfur cluster assembly protein IscU with the Hsc66/Hsc20 molecular chaperone system of Escherichia coli. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[7]  J. Bolin,et al.  Nitrogenase metalloclusters: structures, organization, and synthesis , 1993, Journal of bacteriology.

[8]  S. Rüdiger,et al.  Interaction of Hsp70 chaperones with substrates , 1997, Nature Structural Biology.

[9]  J. Silberg,et al.  Kinetic Characterization of the ATPase Cycle of the Molecular Chaperone Hsc66 from Escherichia coli * , 2000, The Journal of Biological Chemistry.

[10]  R L Blakeley,et al.  Ellman's reagent: 5,5'-dithiobis(2-nitrobenzoic acid)--a reexamination. , 1979, Analytical biochemistry.

[11]  Y. Takahashi,et al.  Hyperproduction of recombinant ferredoxins in escherichia coli by coexpression of the ORF1-ORF2-iscS-iscU-iscA-hscB-hs cA-fdx-ORF3 gene cluster. , 1999, Journal of biochemistry.

[12]  E. Craig,et al.  Functional Specificity Among Hsp70 Molecular Chaperones , 1997, Science.

[13]  J. Silberg,et al.  The Hsc66-Hsc20 Chaperone System inEscherichia coli: Chaperone Activity and Interactions with the DnaK-DnaJ-GrpE System , 1998, Journal of bacteriology.

[14]  J. Agar Role of the IscU protein in iron-sulfur cluster biosynthesis. IscS-mediated assembly of a [Fe_2S_2] cluster in IscU , 2000 .

[15]  Shawn Y. Stevens,et al.  Structural insights into substrate binding by the molecular chaperone DnaK , 2000, Nature Structural Biology.

[16]  P. V. von Hippel,et al.  Calculation of protein extinction coefficients from amino acid sequence data. , 1989, Analytical biochemistry.

[17]  Craig M. Ogata,et al.  Structural Analysis of Substrate Binding by the Molecular Chaperone DnaK , 1996, Science.

[18]  J. Silberg,et al.  Hsc66 and Hsc20, a new heat shock cognate molecular chaperone system from Escherichia coli , 1997, Protein science : a publication of the Protein Society.

[19]  W. Kelley,et al.  The J-domain family and the recruitment of chaperone power. , 1998, Trends in biochemical sciences.

[20]  Y. Takahashi,et al.  Genetic analysis of the isc operon in Escherichia coli involved in the biogenesis of cellular iron-sulfur proteins. , 2001, Journal of biochemistry.

[21]  G. Walker,et al.  Escherichia coli dnaK null mutants are inviable at high temperature , 1987, Journal of bacteriology.

[22]  C. R. Middaugh,et al.  Statistical determination of the average values of the extinction coefficients of tryptophan and tyrosine in native proteins. , 1992, Analytical biochemistry.

[23]  B. Seaton,et al.  A gene encoding a DnaK/hsp70 homolog in Escherichia coli. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[24]  T. Kawula,et al.  Mutations in a gene encoding a new Hsp70 suppress rapid DNA inversion and bgl activation, but not proU derepression, in hns-1 mutant Escherichia coli , 1994, Journal of bacteriology.

[25]  C. Krebs,et al.  IscU as a scaffold for iron-sulfur cluster biosynthesis: sequential assembly of [2Fe-2S] and [4Fe-4S] clusters in IscU. , 2000, Biochemistry.

[26]  T. Langer,et al.  DnaJ-like proteins: molecular chaperones and specific regulators of Hsp70. , 1994, Trends in biochemical sciences.

[27]  M. Fontecave,et al.  Iron-Sulfur Cluster Assembly , 2001, The Journal of Biological Chemistry.

[28]  Hong Wang,et al.  NMR solution structure of the 21 kDa chaperone protein DnaK substrate binding domain: a preview of chaperone-protein interaction. , 1998, Biochemistry.

[29]  M C Peitsch,et al.  ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling. , 1996, Biochemical Society transactions.

[30]  D. T. Elmore,et al.  Solid‐phase peptide synthesis: a practical approach , 1990 .

[31]  D. Dean,et al.  Assembly of Iron-Sulfur Clusters , 1998, The Journal of Biological Chemistry.

[32]  Larry E. Vickery,et al.  Transfer of Sulfur from IscS to IscU during Fe/S Cluster Assembly* , 2001, The Journal of Biological Chemistry.

[33]  M. Webb A continuous spectrophotometric assay for inorganic phosphate and for measuring phosphate release kinetics in biological systems. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[34]  C. Pace,et al.  How to measure and predict the molar absorption coefficient of a protein , 1995, Protein science : a publication of the Protein Society.

[35]  D. Dean,et al.  nifU gene product from Azotobacter vinelandii is a homodimer that contains two identical [2Fe-2S] clusters. , 1994, Biochemistry.

[36]  J. Schneider-Mergener,et al.  Modulation of substrate specificity of the DnaK chaperone by alteration of a hydrophobic arch. , 2000, Journal of molecular biology.

[37]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[38]  B. Bukau,et al.  Role of the DnaK and HscA homologs of Hsp70 chaperones in protein folding in E.coli , 1998, The EMBO journal.

[39]  S. Garland,et al.  Suppressors of Superoxide Dismutase (SOD1) Deficiency in Saccharomyces cerevisiae , 1998, The Journal of Biological Chemistry.