Metagenome Annotation Using a Distributed Grid of Undergraduate Students

The Annotathon is a novel bioinformatics teaching environment, where undergraduate students join in a community annotation effort. Besides being a rewarding educational tool, it holds the added promise of potentially useful scientific findings.

[1]  Points of view: should students be encouraged to publish their research in student-run publications?: Undergraduates: do research, publish! , 2004, Cell biology education.

[2]  Patrick Carswell Educating the masses , 2004, Nature Structural &Molecular Biology.

[3]  Steven J. M. Jones,et al.  Text-mining assisted regulatory annotation , 2008, Genome Biology.

[4]  Diane Ebert-May,et al.  Scientific Teaching , 2004, Science.

[5]  Alexander R. Pico,et al.  WikiPathways: Pathway Editing for the People , 2008, PLoS biology.

[6]  O. White,et al.  Environmental Genome Shotgun Sequencing of the Sargasso Sea , 2004, Science.

[7]  D. Newman Educating the masses. , 1997, Ostomy/wound management.

[8]  Pavel A. Pevzner,et al.  Educating biologists in the 21st century: bioinformatics scientists versus bioinformatics technicians , 2004, Bioinform..

[9]  Deborah Jacobs-Sera,et al.  Exploring the Mycobacteriophage Metaproteome: Phage Genomics as an Educational Platform , 2006, PLoS genetics.

[10]  Sydney Brenner,et al.  Life sentences: Ontology recapitulates philology , 2002, Genome Biology.

[11]  M. Ashburner,et al.  Calling on a million minds for community annotation in WikiProteins , 2008, Genome Biology.

[12]  J. Labov,et al.  Metagenomics: a call for bringing a new science into the classroom (while it's still new). , 2007, CBE life sciences education.

[13]  Jon W. Huss,et al.  A Gene Wiki for Community Annotation of Gene Function , 2008, PLoS biology.

[14]  Scott F Gilbert,et al.  Points of view: should students be encouraged to publish their research in student-run publications?: A case against undergraduate-only journal publications. , 2004, Cell biology education.

[15]  A. Halpern,et al.  The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific , 2007, PLoS biology.

[16]  Cheryl A Kerfeld,et al.  The Undergraduate Genomics Research Initiative , 2007, PLoS biology.

[17]  Benjamin J. Raphael,et al.  The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families , 2007, PLoS biology.