New vectors for co-expression of proteins: structure of Bacillus subtilis ScoAB obtained by high-throughput protocols.

The Bacillus subtilis genes scoA and scoB encode subunits of the heteromeric enzyme ScoAB, a putative succinyl-CoA:acetoacetate coenzyme A transferase. High-throughput, ligation-independent cloning (LIC) vectors used extensively for production and purification of single proteins were modified to allow simultaneous expression of interacting proteins and selective purification of functional complexes. Transfer of the LIC region of vector pMCSG7 (L. Stols, M. Gu, L. Dieckman, R. Raffen, F.R. Collart, M.I. Donnelly. A new vector for high-throughput, ligation-independent cloning encoding a tobacco etch virus protease cleavage site. Protein Expr. Purif. (2002) 25, 8-15) into commercial vectors with alternative, compatible origins of replication allowed introduction of standard LIC PCR products into the vectors by uniform protocols. Replacement of the His-tag encoding region of pMCSG7 with a sequence encoding the S-tag enabled selective purification of interacting proteins based on the His-tag associated with one member of the complex. When expressed separately and mixed, the ScoAB subunits failed to interact productively; no transferase activity was detected, and S-tagged ScoB failed to co-purify with His-tagged ScoA. Co-expression, in contrast, generated active transferase that catalyzed the predicted reaction. The ScoAB complex was purified by standard high-throughput metal-ion affinity chromatography procedures, crystallized robotically, and its structure was determined by molecular replacement.

[1]  J. Sorge,et al.  Dual-expression vectors for efficient protein expression in both E. coli and mammalian cells. , 2003, Methods in molecular biology.

[2]  Christophe Romier,et al.  Co-expression of protein complexes in prokaryotic and eukaryotic hosts: experimental procedures, database tracking and case studies. , 2006, Acta crystallographica. Section D, Biological crystallography.

[3]  N. Kholod,et al.  Novel vectors for co-expression of two proteins in E. coli. , 2001, BioTechniques.

[4]  J. Howard,et al.  Mechanism-based fragmentation of coenzyme A transferase. Comparison of alpha 2-macroglobulin and coenzyme A transferase thiol ester reactions. , 1986, The Journal of biological chemistry.

[5]  F. Collart,et al.  A new vector for high-throughput, ligation-independent cloning encoding a tobacco etch virus protease cleavage site. , 2002, Protein expression and purification.

[6]  F. Studier,et al.  Use of T7 RNA polymerase to direct expression of cloned genes. , 1990, Methods in enzymology.

[7]  B. Suter,et al.  Yeast-based functional genomics and proteomics technologies: the first 15 years and beyond. , 2006, BioTechniques.

[8]  H. H. Park,et al.  General co-expression vectors for the overexpression of heterodimeric protein complexes in Escherichia coli. , 2004, Protein expression and purification.

[9]  C. Harwood,et al.  Characterization of the genes encoding beta-ketoadipate: succinyl-coenzyme A transferase in Pseudomonas putida , 1992, Journal of bacteriology.

[10]  A. Joachimiak,et al.  Autotracing of Escherichia coli acetate CoA-transferase alpha-subunit structure using 3.4 A MAD and 1.9 A native data. , 2002, Acta crystallographica. Section D, Biological crystallography.

[11]  R. Raines,et al.  The S.Tag fusion system for protein purification. , 2000, Methods in enzymology.

[12]  P. Chanda,et al.  A set of ligation-independent expression vectors for co-expression of proteins in Escherichia coli. , 2006, Protein expression and purification.

[13]  Haian Fu,et al.  Protein-protein interactions : methods and applications , 2004 .

[14]  M. James,et al.  Pig heart CoA transferase exists as two oligomeric forms separated by a large kinetic barrier. , 2000, Biochemistry.

[15]  S. Harrison,et al.  Whither structural biology? , 2004, Nature Structural &Molecular Biology.

[16]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[17]  R. Marmorstein,et al.  Co-expression of proteins in E. coli using dual expression vectors. , 2003, Methods in molecular biology.

[18]  Giulio Superti-Furga,et al.  Protein complexes and proteome organization from yeast to man. , 2003, Current opinion in chemical biology.

[19]  Hui Li,et al.  Automation of protein purification for structural genomics , 2004, Journal of Structural and Functional Genomics.

[20]  M. Vignali,et al.  A Facile Method for High-throughput Co-expression of Protein Pairs*S , 2004, Molecular & Cellular Proteomics.

[21]  F. Collart,et al.  Bacterial expression strategies for human angiogenesis proteins , 2006, Journal of Structural and Functional Genomics.

[22]  C. S. Millard,et al.  An expression vector tailored for large-scale, high-throughput purification of recombinant proteins. , 2006, Protein expression and purification.

[23]  L. Swenson,et al.  Structure of the CoA transferase from pig heart to 1.7 A resolution. , 2004, Acta crystallographica. Section D, Biological crystallography.

[24]  Raymond C Stevens,et al.  Long live structural biology , 2004, Nature Structural &Molecular Biology.

[25]  F. Collart,et al.  Express primer tool for high-throughput gene cloning and expression. , 2002, BioTechniques.

[26]  C. S. Millard,et al.  Production of selenomethionine-labeled proteins in two-liter plastic bottles for structure determination , 2004, Journal of Structural and Functional Genomics.

[27]  Martin Phillips,et al.  Toward the structural genomics of complexes: crystal structure of a PE/PPE protein complex from Mycobacterium tuberculosis. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[28]  Jodi R Parrish,et al.  Yeast two-hybrid contributions to interactome mapping. , 2006, Current opinion in biotechnology.

[29]  R. Marmorstein,et al.  Coexpression of proteins in bacteria using T7-based expression plasmids: expression of heteromeric cell-cycle and transcriptional regulatory complexes. , 2000, Protein expression and purification.

[30]  F. Wold Macromolecules: structure and function , 1971 .

[31]  K. Bateman,et al.  Structure of the mammalian CoA transferase from pig heart. , 2002, Biochemistry.

[32]  H. Lehrach,et al.  A dual-expression vector allowing expression in E. coli and P. pastoris, including new modifications. , 2003, Methods in molecular biology.

[33]  R. Huber,et al.  Glutaconate CoA-transferase from Acidaminococcus fermentans: the crystal structure reveals homology with other CoA-transferases. , 1997, Structure.

[34]  Albert Chan,et al.  PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs , 2006, BMC Bioinformatics.

[35]  Gregory A.Petsko and Dagmar Ringe Protein structure and function , 2003 .

[36]  A. Blum,et al.  Cloning and Characterization of Helicobacter pyloriSuccinyl CoA:Acetoacetate CoA-transferase, a Novel Prokaryotic Member of the CoA-transferase Family* , 1997, The Journal of Biological Chemistry.

[37]  Leemor Joshua-Tor,et al.  Strategies for protein coexpression in Escherichia coli , 2006, Nature Methods.

[38]  N. Maltsev,et al.  Genome-scale expression of proteins from Bacillus subtilis , 2004, Journal of Structural and Functional Genomics.

[39]  B. Oh,et al.  Two‐promoter vector is highly efficient for overproduction of protein complexes , 2004, Protein science : a publication of the Protein Society.

[40]  S. A. Johnston,et al.  Release of proteins and peptides from fusion proteins using a recombinant plant virus proteinase. , 1994, Analytical biochemistry.

[41]  T. Creighton Proteins: Structures and Molecular Properties , 1986 .