Homology among (βα) 8 barrels: implications for the evolution of metabolic pathways 1 1Edited by G. Von Heijne
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[1] M Wilmanns,et al. Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion. , 2000, Science.
[2] S. Remington,et al. Crystal structure of Escherichia coli malate synthase G complexed with magnesium and glyoxylate at 2.0 A resolution: mechanistic implications. , 2000, Biochemistry.
[3] J. Gerlt,et al. New wine from old barrels , 2000, Nature Structural Biology.
[4] S E Ealick,et al. The crystal structure and mechanism of orotidine 5'-monophosphate decarboxylase. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[5] Alan R. Fersht,et al. Directed evolution of new catalytic activity using the α/β-barrel scaffold , 2000, Nature.
[6] Michael Y. Galperin,et al. Aldolases of the DhnA family: a possible solution to the problem of pentose and hexose biosynthesis in archaea. , 2000, FEMS microbiology letters.
[7] H. Eklund,et al. Glycyl radical enzymes: a conservative structural basis for radicals. , 1999, Structure.
[8] D. Hough,et al. An extremely thermostable aldolase from Sulfolobus solfataricus with specificity for non-phosphorylated substrates. , 1999, The Biochemical journal.
[9] A C May,et al. Toward more meaningful hierarchical classification of protein three‐dimensional structures , 1999, Proteins.
[10] B. Snel,et al. Pathway alignment: application to the comparative analysis of glycolytic enzymes. , 1999, The Biochemical journal.
[11] D T Jones,et al. Protein secondary structure prediction based on position-specific scoring matrices. , 1999, Journal of molecular biology.
[12] R. Kretsinger,et al. Crystal structure of phenylalanine-regulated 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase from Escherichia coli. , 1999, Structure.
[13] A. Mesecar,et al. Role of lysine 240 in the mechanism of yeast pyruvate kinase catalysis. , 1999, Biochemistry.
[14] Lindsay Sawyer,et al. The two types of 3-dehydroquinase have distinct structures but catalyze the same overall reaction , 1999, Nature Structural Biology.
[15] P R Evans,et al. Crystal structure of substrate complexes of methylmalonyl-CoA mutase. , 1999, Biochemistry.
[16] H. Chiu,et al. Crystal structure of thiamin phosphate synthase from Bacillus subtilis at 1.25 A resolution. , 1999, Biochemistry.
[17] M. Gerstein,et al. The relationship between protein structure and function: a comprehensive survey with application to the yeast genome. , 1999, Journal of molecular biology.
[18] E. Koonin,et al. Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. , 1999, Journal of molecular biology.
[19] G. Schulz,et al. Structure and mechanism of the amphibolic enzyme D-ribulose-5-phosphate 3-epimerase from potato chloroplasts. , 1999, Journal of molecular biology.
[20] G A Leonard,et al. The crystal structure of Escherichia coli class II fructose-1, 6-bisphosphate aldolase in complex with phosphoglycolohydroxamate reveals details of mechanism and specificity. , 1999, Journal of molecular biology.
[21] A Kihara,et al. Three-dimensional structure of phosphoenolpyruvate carboxylase: a proposed mechanism for allosteric inhibition. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[22] J C Sacchettini,et al. Crystal structure of quinolinic acid phosphoribosyltransferase from Mmycobacterium tuberculosis: a potential TB drug target. , 1998, Structure.
[23] R. Thoma,et al. A histidine gene cluster of the hyperthermophile Thermotoga maritima: sequence analysis and evolutionary significance , 1998, Extremophiles.
[24] Michael Y. Galperin,et al. Analogous enzymes: independent inventions in enzyme evolution. , 1998, Genome research.
[25] C. Orengo,et al. Protein folds and functions. , 1998, Structure.
[26] A Bairoch,et al. Protein annotation: detective work for function prediction. , 1998, Trends in genetics : TIG.
[27] Sine Larsen,et al. The crystal structure of lactococcus lactis dihydroorotate dehydrogenase A complexed with the enzyme reaction product throws light on its enzymatic function , 1998, Protein science : a publication of the Protein Society.
[28] G. H. Reed,et al. Structure of the bis(Mg2+)-ATP-oxalate complex of the rabbit muscle pyruvate kinase at 2.1 A resolution: ATP binding over a barrel. , 1998, Biochemistry.
[29] B. Stoddard,et al. The allosteric regulation of pyruvate kinase by fructose-1,6-bisphosphate. , 1998, Structure.
[30] Patricia C. Babbitt,et al. Understanding Enzyme Superfamilies , 1997, The Journal of Biological Chemistry.
[31] R J Fletterick,et al. Crystal structure of Tritrichomonas foetus inosine-5'-monophosphate dehydrogenase and the enzyme-product complex. , 1997, Biochemistry.
[32] D. Davies,et al. Crystal structures of a mutant (betaK87T) tryptophan synthase alpha2beta2 complex with ligands bound to the active sites of the alpha- and beta-subunits reveal ligand-induced conformational changes. , 1997, Biochemistry.
[33] J. Champness,et al. Crystal structure of the anti-bacterial sulfonamide drug target dihydropteroate synthase , 1997, Nature Structural Biology.
[34] M. Hennig,et al. Crystal structure at 2.0 A resolution of phosphoribosyl anthranilate isomerase from the hyperthermophile Thermotoga maritima: possible determinants of protein stability. , 1997, Biochemistry.
[35] C Sander,et al. An evolutionary treasure: unification of a broad set of amidohydrolases related to urease , 1997, Proteins.
[36] M. Lawrence,et al. Structure and mechanism of a sub-family of enzymes related to N-acetylneuraminate lyase. , 1997, Journal of molecular biology.
[37] J C Sacchettini,et al. A new function for a common fold: the crystal structure of quinolinic acid phosphoribosyltransferase. , 1997, Structure.
[38] G. H. Reed,et al. The enolase superfamily: a general strategy for enzyme-catalyzed abstraction of the alpha-protons of carboxylic acids. , 1996, Biochemistry.
[39] P. Bork,et al. Non-orthologous gene displacement. , 1996, Trends in genetics : TIG.
[40] T. Conway,et al. Evolution of carbohydrate metabolic pathways. , 1996, Research in microbiology.
[41] Georg A. Sprenger,et al. Crystal structure of transaldolase B from Escherichia coli suggests a circular permutation of the α/β barrel within the class I aldolase family , 1996 .
[42] Š. Janeček. Invariant glycines and prolines flanking in loops the strand β2 of various (α/β)8‐barrel enzymes: A hidden homology? , 1996, Protein science : a publication of the Protein Society.
[43] G. H. Reed,et al. A carboxylate oxygen of the substrate bridges the magnesium ions at the active site of enolase: structure of the yeast enzyme complexed with the equilibrium mixture of 2-phosphoglycerate and phosphoenolpyruvate at 1.8 A resolution. , 1996, Biochemistry.
[44] D. Dunaway-Mariano,et al. Swiveling-domain mechanism for enzymatic phosphotransfer between remote reaction sites. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[45] A. Goldman,et al. The refined X-ray structure of muconate lactonizing enzyme from Pseudomonas putida PRS2000 at 1.85 A resolution. , 1995, Journal of molecular biology.
[46] M. Hennig,et al. 2.0 A structure of indole-3-glycerol phosphate synthase from the hyperthermophile Sulfolobus solfataricus: possible determinants of protein stability. , 1995, Structure.
[47] S. Balaz,et al. Functionally essential, invariant glutamate near the C-terminus of strand β5 in various (α/β)8-barrel enzymes as a possible indicator of their evolutionary relatedness , 1995 .
[48] Š. Janeček. Similarity of different β‐strands flanked in loops by glycines and prolines from distinct (α/β)8‐barrel enzymes: Chance or a homology? , 1995, Protein science : a publication of the Protein Society.
[49] A G Murzin,et al. SCOP: a structural classification of proteins database for the investigation of sequences and structures. , 1995, Journal of molecular biology.
[50] R. Huber,et al. The crystal structure of dihydrodipicolinate synthase from Escherichia coli at 2.5 A resolution. , 1995, Journal of molecular biology.
[51] Peer Bork,et al. Divergent evolution of a β/α‐barrel subclass: Detection of numerous phosphate‐binding sites by motif search , 1995 .
[52] Byungkook Lee,et al. Alignment of Beta-barrels in (β/α)8 Proteins using Hydrogen-bonding Pattern , 1994 .
[53] G. Petsko,et al. Crystal structure of recombinant chicken triosephosphate isomerase-phosphoglycolohydroxamate complex at 1.8-A resolution. , 1994, Biochemistry.
[54] C. Cambillau,et al. The 2.6‐Å refined structure of the Escherichia coli recombinant Saccharomyces cerevisiae flavocytochrome b2‐sulfite complex , 1994, Protein science : a publication of the Protein Society.
[55] K. Piontek,et al. The crystal structure of fructose‐1,6‐bisphosphate aldolase fromDrosophila melanogaster at 2.5A˚resolution , 1993, FEBS letters.
[56] A G Murzin,et al. Sweet-tasting protein monellin is related to the cystatin family of thiol proteinase inhibitors. , 1993, Journal of molecular biology.
[57] G. Barton,et al. Multiple protein sequence alignment from tertiary structure comparison: Assignment of global and residue confidence levels , 1992, Proteins.
[58] M Wilmanns,et al. Structural conservation in parallel beta/alpha-barrel enzymes that catalyze three sequential reactions in the pathway of tryptophan biosynthesis. , 1991, Biochemistry.
[59] P. Bork,et al. Sequence similarities between tryptophan synthase beta subunit and other pyridoxal-phosphate-dependent enzymes. , 1990, Biochemical and biophysical research communications.
[60] Gregory A. Petsko,et al. The evolution of a/ barrel enzymes , 1990 .
[61] G N Cohen,et al. Evolution in biosynthetic pathways: two enzymes catalyzing consecutive steps in methionine biosynthesis originate from a common ancestor and possess a similar regulatory region. , 1986, Proceedings of the National Academy of Sciences of the United States of America.
[62] M. Hatada,et al. Structure of 2-keto-3-deoxy-6-phosphogluconate aldolase at 2 . 8 A resolution. , 1978, Journal of molecular biology.
[63] N H Horowitz,et al. On the Evolution of Biochemical Syntheses. , 1945, Proceedings of the National Academy of Sciences of the United States of America.
[64] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[65] Patrice Koehl,et al. The ASTRAL compendium for protein structure and sequence analysis , 2000, Nucleic Acids Res..
[66] Peter D. Karp,et al. The EcoCyc and MetaCyc databases , 2000, Nucleic Acids Res..
[67] R. Copley,et al. Fold recognition using sequence and secondary structure information , 1999, Proteins.
[68] Nozomi Nagano,et al. Barrel structures in proteins: Automatic identification and classification including a sequence analysis of TIM barrels , 1999, Protein science : a publication of the Protein Society.
[69] P C Babbitt,et al. Mechanistically diverse enzyme superfamilies: the importance of chemistry in the evolution of catalysis. , 1998, Current opinion in chemical biology.
[70] Gapped BLAST and PSI-BLAST: A new , 1997 .
[71] R. Jensen. Enzyme recruitment in evolution of new function. , 1976, Annual review of microbiology.
[72] N. Horowitz,et al. The Evolution of Biochemical Syntheses — Retrospect and Prospect , 1965 .
[73] V. Bryson,et al. Evolving Genes and Proteins. , 1965, Science.