Nature of the water/aromatic parallel alignment interactions
暂无分享,去创建一个
Mariusz Pawel Mitoraj | Artur Michalak | Goran V. Janjic | Vesna B. Medakovic | Dusan Z. Veljkovic | Snezana D. Zaric | Milos K. Milcic | M. Milčić | S. Zarić | G. Janjić | M. Mitoraj | V. Medakovic | A. Michalak | D. Veljković
[1] Arvi Rauk,et al. Carbon monoxide, carbon monosulfide, molecular nitrogen, phosphorus trifluoride, and methyl isocyanide as .sigma. donors and .pi. acceptors. A theoretical study by the Hartree-Fock-Slater transition-state method , 1979 .
[2] Trygve Helgaker,et al. Basis-set convergence of correlated calculations on water , 1997 .
[3] W. Goddard,et al. Entropy and the driving force for the filling of carbon nanotubes with water , 2011, Proceedings of the National Academy of Sciences.
[4] Wolfgang Meier,et al. Highly permeable polymeric membranes based on the incorporation of the functional water channel protein Aquaporin Z , 2007, Proceedings of the National Academy of Sciences.
[5] K. Szalewicz,et al. Perturbation theory calculations of intermolecular interaction energies , 1991 .
[6] Dongwook Kim,et al. Understanding of assembly phenomena by aromatic-aromatic interactions: benzene dimer and the substituted systems. , 2007, The journal of physical chemistry. A.
[7] S. Zarić,et al. Crystallographic and ab initio study of pyridine CH–O interactions: linearity of the interactions and influence of pyridine classical hydrogen bonds , 2013 .
[8] S. Zarić,et al. The influence of water molecule coordination onto the water–aromatic interaction. Strong interactions of water coordinating to a metal ion , 2013 .
[9] Artur Michalak,et al. Applications of natural orbitals for chemical valence in a description of bonding in conjugated molecules , 2008, Journal of molecular modeling.
[10] S. Zarić,et al. Are C–H⋯O interactions linear? The case of aromatic CH donors , 2011 .
[11] Evert Jan Baerends,et al. Self-consistent molecular Hartree—Fock—Slater calculations I. The computational procedure , 1973 .
[12] Kwang S. Kim,et al. Theory and applications of computational chemistry : the first forty years , 2005 .
[13] Vesna B. Medakovic,et al. C–H/O interactions of nucleic bases with a water molecule: a crystallographic and quantum chemical study , 2014 .
[14] Kazumasa Honda,et al. Origin of the Attraction and Directionality of the NH/π Interaction: Comparison with OH/π and CH/π Interactions , 2000 .
[15] M. Huggins,et al. HYDROGEN BRIDGES IN ORGANIC COMPOUNDS , 1936 .
[16] Vesna B. Medakovic,et al. Parallel water/aromatic interactions of non-coordinated and coordinated water. , 2014, Chemphyschem : a European journal of chemical physics and physical chemistry.
[17] C. David Sherrill,et al. Highly Accurate Coupled Cluster Potential Energy Curves for the Benzene Dimer: Sandwich, T-Shaped, and Parallel-Displaced Configurations , 2004 .
[18] Robert Moszynski,et al. Perturbation Theory Approach to Intermolecular Potential Energy Surfaces of van der Waals Complexes , 1994 .
[19] David Feller,et al. Strength of the Benzene−Water Hydrogen Bond , 1999 .
[20] S. F. Boys,et al. The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors , 1970 .
[21] S. Grimme,et al. A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu. , 2010, The Journal of chemical physics.
[22] Artur Michalak,et al. Bond orbitals from chemical valence theory. , 2008, The journal of physical chemistry. A.
[23] M. Mitoraj,et al. Role of Ancillary Ligands in a Description of Copper(I)−Bis(trimethylsilyl)acetylene bonding. A Theoretical Study , 2009 .
[24] K. Jordan,et al. DF-DFT-SAPT Investigation of the Interaction of a Water Molecule to Coronene and Dodecabenzocoronene: Implications for the Water−Graphite Interaction , 2009 .
[25] Evert Jan Baerends,et al. Numerical integration for polyatomic systems , 1992 .
[26] B. Schmidt,et al. Anisotropy of the water-carbon interaction: molecular simulations of water in low-diameter carbon nanotubes. , 2013, Physical chemistry chemical physics : PCCP.
[27] C. David Sherrill,et al. Energy component analysis of π interactions. , 2013, Accounts of chemical research.
[28] Peter Agre,et al. Aquaporin water channels (Nobel Lecture). , 2004, Angewandte Chemie.
[29] C. Sherrill,et al. Effects of heteroatoms on aromatic pi-pi interactions: benzene-pyridine and pyridine dimer. , 2009, The journal of physical chemistry. A.
[30] T. Ziegler,et al. On the origin of the trans-influence in square planar d8-complexes: A theoretical study , 2009 .
[31] L. Pauling. The Structure and Entropy of Ice and of Other Crystals with Some Randomness of Atomic Arrangement , 1935 .
[32] E. Baerends,et al. Self-consistent molecular Hartree—Fock—Slater calculations II. The effect of exchange scaling in some small molecules , 1973 .
[33] Mark S. Gordon,et al. General atomic and molecular electronic structure system , 1993, J. Comput. Chem..
[34] Dušan P. Malenov,et al. Mutual influence of parallel, CH/O, OH/π and lone pair/π interactions in water/benzene/water system , 2013 .
[35] Kwang S. Kim,et al. A theoretical investigation of the nature of the π-H interaction in ethene–H2O, benzene–H2O, and benzene–(H2O)2 , 1999 .
[36] G. Hummer,et al. Water conduction through the hydrophobic channel of a carbon nanotube , 2001, Nature.
[37] S. Zarić,et al. Parallel alignment of water and aryl rings-crystallographic and theoretical evidence for the interaction. , 2008, Chemical communications.
[38] Artur Michalak,et al. A Combined Charge and Energy Decomposition Scheme for Bond Analysis. , 2009, Journal of chemical theory and computation.
[39] J. Malone,et al. X[mdash ]H[middot][middot][middot][pi ] (phenyl) interactions Theoretical and crystallographic observations , 1997 .
[40] F. Spiegelman,et al. Water clusters adsorbed on polycyclic aromatic hydrocarbons: energetics and conformational dynamics. , 2013, The Journal of chemical physics.
[41] B. Boo,et al. Theoretical investigations for the molecular structures and binding energies for C6H6(H2O) n , (n = 1–7) complexes , 2009 .
[42] E. Knapp,et al. Metal ligand aromatic cation-pi interactions in metalloproteins: ligands coordinated to metal interact with aromatic residues. , 2000, Chemistry.
[43] W. M. Latimer,et al. POLARITY AND IONIZATION FROM THE STANDPOINT OF THE LEWIS THEORY OF VALENCE. , 1920 .
[44] T. Steiner,et al. Hydrogen bonds with pi-acceptors in proteins: frequencies and role in stabilizing local 3D structures. , 2001, Journal of molecular biology.
[45] S. Tsuzuki,et al. Origin of attraction and directionality of the pi/pi interaction: model chemistry calculations of benzene dimer interaction. , 2002, Journal of the American Chemical Society.
[46] T. Dunning,et al. Electron affinities of the first‐row atoms revisited. Systematic basis sets and wave functions , 1992 .
[47] Artur Michalak,et al. Natural orbitals for chemical valence as descriptors of chemical bonding in transition metal complexes , 2007, Journal of molecular modeling.
[48] K. Jordan,et al. Benchmark calculations of water-acene interaction energies: Extrapolation to the water-graphene limit and assessment of dispersion-corrected DFT methods. , 2010, Physical chemistry chemical physics : PCCP.
[49] Roger E Bumgarner,et al. Benzene Forms Hydrogen Bonds with Water , 1992, Science.
[50] Steven E. Wheeler,et al. Physical Nature of Substituent Effects in XH/π Interactions. , 2012, Journal of chemical theory and computation.
[51] Artur Michalak,et al. Donor–Acceptor Properties of Ligands from the Natural Orbitals for Chemical Valence , 2007 .
[52] M. Schütz,et al. On the physisorption of water on graphene: a CCSD(T) study. , 2011, Physical chemistry chemical physics : PCCP.
[53] Mark S Gordon,et al. Benzene-pyridine interactions predicted by the effective fragment potential method. , 2011, The journal of physical chemistry. A.
[54] Marie-Pierre Gaigeot,et al. Quantum Effects in the Threshold Photoionization and Energetics of the Benzene−H2O and Benzene−D2O Complexes: Experiment and Simulation , 1998 .
[55] S. Zarić,et al. Water/Aromatic Parallel Alignment Interactions. Significant Interactions at Large Horizontal Displacements , 2011 .
[56] P. Balaram,et al. Entrapment of a water wire in a hydrophobic peptide channel with an aromatic lining. , 2011, Journal of Physical Chemistry B.
[57] F. Allen. The Cambridge Structural Database: a quarter of a million crystal structures and rising. , 2002, Acta crystallographica. Section B, Structural science.
[58] P. Wormer,et al. Theory and Applications of Computational Chemistry The First Forty Years , 2005 .
[59] T. Ziegler,et al. On the Nature of the Agostic Bond between Metal Centers and β-Hydrogen Atoms in Alkyl Complexes. An Analysis Based on the Extended Transition State Method and the Natural Orbitals for Chemical Valence Scheme (ETS-NOCV) , 2009 .
[60] F. Matthias Bickelhaupt,et al. Chemistry with ADF , 2001, J. Comput. Chem..
[61] A. Orpen,et al. Water chains in hydrophobic crystal channels: nanoporous materials as supramolecular analogues of carbon nanotubes. , 2010, Angewandte Chemie.
[62] M. Font‐Bardia,et al. Water wires in the nanoporous form II of carbamazepine: a single-crystal X-ray diffraction analysis , 2013 .
[63] X. Xuan,et al. The assessment and application of an approach to noncovalent interactions: the energy decomposition analysis (EDA) in combination with DFT of revised dispersion correction (DFT-D3) with Slater-type orbital (STO) basis set , 2012, Journal of Molecular Modeling.
[64] Burke,et al. Generalized Gradient Approximation Made Simple. , 1996, Physical review letters.