Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar
暂无分享,去创建一个
A. Varsani | G. Harkins | J. Lett | P. Lefeuvre | D. Martin | V. Ravigné | B. Reynaud | Mireille Harimalala | I. Zinga | M. Walters | B. Mabvakure | A. De Bruyn | M. Hoareau
[1] F. Chiroleu,et al. Molecular epidemiology of cassava mosaic disease in Madagascar , 2015 .
[2] Judith K. Brown,et al. Revision of Begomovirus taxonomy based on pairwise sequence comparisons , 2015, Archives of Virology.
[3] B. Murrell,et al. RDP4: Detection and analysis of recombination patterns in virus genomes , 2015, Virus evolution.
[4] Arvind Varsani,et al. SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation , 2014, PloS one.
[5] M. Labuschagne,et al. Genetic diversity of cassava (Manihot esculenta Crantz) landraces and cultivars from southern, eastern and central Africa , 2013, Plant Genetic Resources.
[6] Emilie Villar,et al. East African cassava mosaic-like viruses from Africa to Indian ocean islands: molecular diversity, evolutionary history and geographical dissemination of a bipartite begomovirus , 2012, BMC Evolutionary Biology.
[7] M. Suchard,et al. Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. , 2012, Molecular biology and evolution.
[8] J. Lett,et al. A novel cassava-infecting begomovirus from Madagascar: cassava mosaic Madagascar virus , 2012, Archives of Virology.
[9] J. Lett,et al. Evolution of African cassava mosaic virus by recombination between bipartite and monopartite begomoviruses , 2012, Virology Journal.
[10] M. Suchard,et al. Bayesian Phylogenetics with BEAUti and the BEAST 1.7 , 2012, Molecular biology and evolution.
[11] M. Nei,et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. , 2011, Molecular biology and evolution.
[12] C. Malmstrom,et al. The expanding field of plant virus ecology: historical foundations, knowledge gaps, and research directions. , 2011, Virus research.
[13] F. Balloux,et al. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations , 2010, BMC Genetics.
[14] O. Nikolaitchik,et al. Patterns of Human Immunodeficiency Virus Type 1 Recombination Ex Vivo Provide Evidence for Coadaptation of Distant Sites, Resulting in Purifying Selection for Intersubtype Recombinants during Replication , 2010, Journal of Virology.
[15] B. L. Patil,et al. Distinct evolutionary histories of the DNA-A and DNA-B components of bipartite begomoviruses , 2010, BMC Evolutionary Biology.
[16] Marc A Suchard,et al. Using Time-Structured Data to Estimate Evolutionary Rates of Double-Stranded DNA Viruses , 2010, Molecular biology and evolution.
[17] Paramvir S. Dehal,et al. FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments , 2010, PloS one.
[18] Alexei J. Drummond,et al. Bayesian Phylogeography Finds Its Roots , 2009, PLoS Comput. Biol..
[19] B. L. Patil,et al. Cassava mosaic geminiviruses: actual knowledge and perspectives. , 2009, Molecular plant pathology.
[20] E. Holmes,et al. Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses. , 2009, The Journal of general virology.
[21] Roger A. C. Jones,et al. Plant virus emergence and evolution: origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control. , 2009, Virus research.
[22] D. Martin,et al. Widely Conserved Recombination Patterns among Single-Stranded DNA Viruses , 2008, Journal of Virology.
[23] J. Kummert,et al. Application of a Simplified Molecular Protocol to Reveal Mixed Infections with Begomoviruses in Cassava , 2008 .
[24] T Jombart,et al. Revealing cryptic spatial patterns in genetic variability by a new multivariate method , 2008, Heredity.
[25] E. Rybicki,et al. A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. , 2008, Journal of virological methods.
[26] D. Martin,et al. Begomovirus 'melting pot' in the south-west Indian Ocean islands: molecular diversity and evolution through recombination. , 2007, The Journal of general virology.
[27] David Posada,et al. An Exact Nonparametric Method for Inferring Mosaic Structure in Sequence Triplets , 2007, Genetics.
[28] S. Bull,et al. Infectivity, pseudorecombination and mutagenesis of Kenyan cassava mosaic begomoviruses. , 2007, The Journal of general virology.
[29] A. Fraile,et al. Constraints to Genetic Exchange Support Gene Coadaptation in a Tripartite RNA Virus , 2007, PLoS pathogens.
[30] S. Bull,et al. Genetic diversity and phylogeography of cassava mosaic viruses in Kenya. , 2006, The Journal of general virology.
[31] D. Posada,et al. The Evolutionary Value of Recombination Is Constrained by Genome Modularity , 2005, PLoS genetics.
[32] A. Dixon,et al. Molecular Variability and Distribution of Cassava Mosaic Begomoviruses in Nigeria , 2005 .
[33] J. Ndunguru,et al. Molecular biodiversity of cassava begomoviruses in Tanzania: evolution of cassava geminiviruses in Africa and evidence for East Africa being a center of diversity of cassava geminiviruses , 2005, Virology Journal.
[34] David Posada,et al. RDP2: recombination detection and analysis from sequence alignments , 2005, Bioinform..
[35] C. Fauquet,et al. Cassava mosaic geminiviruses in Africa , 2004, Plant Molecular Biology.
[36] Peter Daszak,et al. Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers. , 2004, Trends in ecology & evolution.
[37] M. Maruthi,et al. Dual begomovirus infections and high Bemisia tabaci populations: two factors driving the spread of a cassava mosaic disease pandemic , 2004 .
[38] S. Bull,et al. East African cassava mosaic Zanzibar virus – a recombinant begomovirus species with a mild phenotype , 2004, Archives of Virology.
[39] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[40] J. Brown,et al. A distinct Bemisia tabaci (Gennadius) (Hemiptera: Sternorrhyncha: Aleyrodidae) genotype cluster is associated with the epidemic of severe cassava mosaic virus disease in Uganda , 2002, Molecular ecology.
[41] D. Robinson,et al. Occurrence of three distinct begomoviruses in cassava in Madagascar , 2002 .
[42] C. Fauquet,et al. Genomic and biological diversity of the African cassava geminiviruses , 2001, Euphytica.
[43] C. Fauquet,et al. Recombination, pseudorecombination and synergism of geminiviruses are determinant keys to the epidemic of severe cassava mosaic disease in Uganda. , 2001, The Journal of general virology.
[44] Mark J. Gibbs,et al. Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences , 2000, Bioinform..
[45] Darren Martin,et al. RDP: detection of recombination amongst aligned sequences , 2000, Bioinform..
[46] S. Sawyer,et al. Possible emergence of new geminiviruses by frequent recombination. , 1999, Virology.
[47] X. Zhou,et al. Types of variation in DNA-A among isolates of East African cassava mosaic virus from Kenya, Malawi and Tanzania. , 1998, The Journal of general virology.
[48] C. Fauquet,et al. First Report of the Presence of East African Cassava Mosaic Virus in Cameroon. , 1998, Plant disease.
[49] Yule Liu,et al. Evidence that DNA-A of a geminivirus associated with severe cassava mosaic disease in Uganda has arisen by interspecific recombination. , 1997, The Journal of general virology.
[50] John Maynard Smith,et al. Analyzing the mosaic structure of genes , 1992, Journal of Molecular Evolution.
[51] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[52] L. Boykin,et al. Bemisia tabaci: a statement of species status. , 2011, Annual review of entomology.
[53] P. Aerni. Mobilizing Science and Technology for Development: The Case of the Cassava Biotechnology Network (CBN) , 2006 .
[54] C. Fauquet,et al. Evidence of synergism between African cassava mosaic virus and a new double-recombinant geminivirus infecting cassava in Cameroon. , 2000, The Journal of general virology.
[55] L. Berrie,et al. Molecular characterisation of a distinct South African cassava infecting geminivirus , 1998, Archives of Virology.
[56] D. Fargette,et al. The epidemic of cassava mosaic virus disease in Madagascar in the 1930s-1940s: lessons for the current situation in Uganda , 1997 .
[57] M. Newton. Approximate Bayesian-inference With the Weighted Likelihood Bootstrap , 1994 .
[58] B. Harrison,et al. Properties, relationships and distribution of cassava mosaic geminiviruses , 1994 .
[59] D. Fargette,et al. African cassava mosaic virus: etiology epidemiology, and control. , 1990 .
[60] J. Stanley,et al. Nucleotide sequence of cassava latent virus DNA , 1983, Nature.
[61] R. Woods,et al. Etiology of African cassava mosaic disease. , 1983 .