A tripartite complex of suPAR, APOL1 risk variants and alpha(v)beta(3) integrin on podocytes mediates chronic kidney disease

Soluble urokinase plasminogen activator receptor (suPAR) independently predicts chronic kidney disease (CKD) incidence and progression. Apolipoprotein L1 (APOL1) gene variants G1 and G2, but not the reference allele (G0), are associated with an increased risk of CKD in individuals of recent African ancestry. Here we show in two large, unrelated cohorts that decline in kidney function associated with APOL1 risk variants was dependent on plasma suPAR levels: APOL1related risk was attenuated in patients with lower suPAR, and strengthened in those with higher suPAR levels. Mechanistically, surface plasmon resonance studies identified high-affinity interactions between suPAR, APOL1 and αvβ3 integrin, whereby APOL1 protein variants G1 and G2 exhibited higher affinity for suPAR-activated avb3 integrin than APOL1 G0. APOL1 G1 or G2 augments αvβ3 integrin activation and causes proteinuria in mice in a suPAR-dependent manner. The synergy of circulating factor suPAR and APOL1 G1 or G2 on αvβ3 integrin activation is a mechanism for CKD. In individuals of recent African ancestry, variants in APOL1 have been associated with certain forms of CKD. Carriers of two risk alleles (either two of G1 or G2; G1/G1 or G2/G2, or one each of G1 and G2; G1/G2) are at heightened risk for focal segmental glomerulosclerosis (FSGS), HIV-associated nephropathy and hypertension-attributed kidney disease1–5. The molecular mechanisms underlying the association between APOL1 risk variants and CKD remain unclear. Inflammation is thought to be a major contributor to APOL1-related CKD, because APOL1 expression in podocytes is induced by components of innate immune pathways, such as those of interferons and Toll-like receptors6. Moreover, the APOL1 high-risk genotype is strongly associated with nephropathy in people with HIV, a state of immune dysregulation7,8. However, a puzzling observation is that not all individuals carrying the high-risk APOL1 genotype develop renal disease, and equally, not all transgenic animal models, including models of mice9 and zebrafish10, expressing high-risk APOL1 variants display the expected kidney phenotypes. Taken together, these findings suggest the possibility of a ‘second hit’ in the pathogenesis of APOL1-associated nephropathy10. SuPAR is a member of the Ly-6/neurotoxin family of signaling proteins and a marker of immune activation that associates with states of systemic inflammation, such as HIV11–13. Hayek et al. Page 2 Nat Med. Author manuscript; available in PMC 2018 June 26. A uhor M anscript

[1]  L. Miller,et al.  APOL1 Renal-Risk Variants Induce Mitochondrial Dysfunction. , 2017, Journal of the American Society of Nephrology : JASN.

[2]  J. Das,et al.  APOL1-G1 in Nephrocytes Induces Hypertrophy and Accelerates Cell Death. , 2017, Journal of the American Society of Nephrology : JASN.

[3]  Jessica L. Mueller,et al.  Most ApoL1 Is Secreted by the Liver. , 2017, Journal of the American Society of Nephrology : JASN.

[4]  M. Schuldiner,et al.  APOL1-Mediated Cell Injury Involves Disruption of Conserved Trafficking Processes. , 2017, Journal of the American Society of Nephrology : JASN.

[5]  Patrick D. Dummer,et al.  Transgenic expression of human APOL1 risk variants in podocytes induces kidney disease in mice , 2017, Nature Medicine.

[6]  D. Scadden,et al.  Bone marrow-derived immature myeloid cells are a main source of circulating suPAR contributing to proteinuric kidney disease , 2016, Nature Medicine.

[7]  R. Parekh,et al.  The evolving science of apolipoprotein-L1 and kidney disease , 2016, Current opinion in nephrology and hypertension.

[8]  D. Friedman,et al.  Apolipoprotein L1 and Kidney Disease in African Americans , 2016, Trends in Endocrinology & Metabolism.

[9]  J. O'Toole,et al.  APOL1-G0 or APOL1-G2 Transgenic Models Develop Preeclampsia but Not Kidney Disease. , 2016, Journal of the American Society of Nephrology : JASN.

[10]  B. Freedman,et al.  Characterization of circulating APOL1 protein complexes in African Americans[S] , 2016, Journal of Lipid Research.

[11]  A. Quyyumi,et al.  Soluble Urokinase Receptor and Chronic Kidney Disease. , 2015, The New England journal of medicine.

[12]  M. Sheetz,et al.  Integrin-beta3 clusters recruit clathrin-mediated endocytic machinery in the absence of traction force , 2015, Nature Communications.

[13]  A. Ashley-Koch,et al.  In vivo Modeling Implicates APOL1 in Nephropathy: Evidence for Dominant Negative Effects and Epistasis under Anemic Stress , 2015, PLoS genetics.

[14]  I. Pastan,et al.  Podocyte injury-driven intracapillary plasminogen activator inhibitor type 1 accelerates podocyte loss via uPAR-mediated β1-integrin endocytosis. , 2015, American journal of physiology. Renal physiology.

[15]  A. Quyyumi,et al.  Circulating CD34+ Progenitor Cells and Risk of Mortality in a Population With Coronary Artery Disease , 2015, Circulation research.

[16]  V. D’Agati,et al.  Innate immunity pathways regulate the nephropathy gene Apolipoprotein L1 , 2014, Kidney international.

[17]  A. Vaheri,et al.  Urine soluble urokinase‐type plasminogen activator receptor levels correlate with proteinuria in Puumala hantavirus infection , 2014, Journal of internal medicine.

[18]  A. Quyyumi,et al.  Soluble Urokinase Plasminogen Activator Receptor Level Is an Independent Predictor of the Presence and Severity of Coronary Artery Disease and of Future Adverse Events , 2014, Journal of the American Heart Association.

[19]  K. Skorecki,et al.  APOL1 risk variants enhance podocyte necrosis through compromising lysosomal membrane permeability. , 2014, American journal of physiology. Renal physiology.

[20]  K. Shu,et al.  Rapamycin promotes podocyte migration through the up-regulation of urokinase receptor. , 2014, Transplantation proceedings.

[21]  R. Bosch,et al.  Plasma apolipoprotein L1 levels do not correlate with CKD. , 2014, Journal of the American Society of Nephrology : JASN.

[22]  Barry I. Freedman,et al.  APOL1 risk variants, race, and progression of chronic kidney disease. , 2013, The New England journal of medicine.

[23]  M. Fornage,et al.  APOL1 variants associate with increased risk of CKD among African Americans. , 2013, Journal of the American Society of Nephrology : JASN.

[24]  Michael E. Johnson,et al.  Reducing agents affect inhibitory activities of compounds: Results from multiple drug targets , 2012, Analytical Biochemistry.

[25]  V. D’Agati,et al.  APOL1 variants increase risk for FSGS and HIVAN but not IgA nephropathy. , 2011, Journal of the American Society of Nephrology : JASN.

[26]  Giulio Genovese,et al.  APOL1 genetic variants in focal segmental glomerulosclerosis and HIV-associated nephropathy. , 2011, Journal of the American Society of Nephrology : JASN.

[27]  T. Reinheckel,et al.  CD2AP in mouse and human podocytes controls a proteolytic program that regulates cytoskeletal structure and cellular survival. , 2011, The Journal of clinical investigation.

[28]  E. Salido,et al.  Circulating urokinase receptor as a cause of focal segmental glomerulosclerosis , 2011, Nature Medicine.

[29]  C. Winkler,et al.  Association of Trypanolytic ApoL1 Variants with Kidney Disease in African Americans , 2010, Science.

[30]  S. Rosset,et al.  Missense mutations in the APOL1 gene are highly associated with end stage kidney disease risk previously attributed to the MYH9 gene , 2010, Human Genetics.

[31]  Jesper Eugen-Olsen,et al.  suPAR: The Molecular Crystal Ball , 2009, Disease markers.

[32]  C. Schmid,et al.  A new equation to estimate glomerular filtration rate. , 2009, Annals of internal medicine.

[33]  K. Cortese,et al.  Clathrin and LRP-1-Independent Constitutive Endocytosis and Recycling of uPAR , 2008, PloS one.

[34]  D. Reich,et al.  MYH9 is associated with nondiabetic end-stage renal disease in African Americans , 2008, Nature Genetics.

[35]  Zhihe Liu,et al.  Apolipoprotein L1, a Novel Bcl-2 Homology Domain 3-only Lipid-binding Protein, Induces Autophagic Cell Death* , 2008, Journal of Biological Chemistry.

[36]  T. Ueno,et al.  LC3 and Autophagy. , 2008, Methods in molecular biology.

[37]  P. Carmeliet,et al.  Modification of kidney barrier function by the urokinase receptor , 2008, Nature Medicine.

[38]  A. Rudensky,et al.  Proteolytic processing of dynamin by cytoplasmic cathepsin L is a mechanism for proteinuric kidney disease. , 2007, The Journal of clinical investigation.

[39]  D. Shaw,et al.  An anti-urokinase plasminogen activator receptor (uPAR) antibody: crystal structure and binding epitope. , 2006, Journal of molecular biology.

[40]  H. Ullum,et al.  High Plasma Levels of Intact and Cleaved Soluble Urokinase Receptor Reflect Immune Activation and Are Independent Predictors of Mortality in HIV-1-Infected Patients , 2005, Journal of acquired immune deficiency syndromes.

[41]  M. O'hare,et al.  A conditionally immortalized human podocyte cell line demonstrating nephrin and podocin expression. , 2002, Journal of the American Society of Nephrology : JASN.

[42]  R. Czekay,et al.  Direct binding of occupied urokinase receptor (uPAR) to LDL receptor-related protein is required for endocytosis of uPAR and regulation of cell surface urokinase activity. , 2001, Molecular biology of the cell.

[43]  H. Ullum,et al.  Serum level of soluble urokinase-type plasminogen activator receptor is a strong and independent predictor of survival in human immunodeficiency virus infection. , 2000, Blood.

[44]  R. Shaw,et al.  beta3 Integrins mediate the cellular entry of hantaviruses that cause respiratory failure. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[45]  H. Ni,et al.  Integrin Activation by Dithiothreitol or Mn2+ Induces a Ligand-occupied Conformation and Exposure of a Novel NH2-terminal Regulatory Site on the β1Integrin Chain* , 1998, The Journal of Biological Chemistry.