SERINC proteins potentiate antiviral type I IFN production and proinflammatory signaling pathways

Description The host restriction factor SERINC5 promotes intracellular innate signaling pathways to inhibit viral infection. Potentiating interferon responses The host restriction factor SERINC5 is found in the plasma membrane and is thought to inhibit HIV-1 infection through its incorporation into virions. Zeng et al. showed that upon viral infection of cells, SERINC5 also localized to mitochondria, where it interacted with the adaptor protein MAVS and promoted its oligomerization. Signaling downstream of MAVS led to activation of transcriptional regulators of the IRF and NF-κB families and the expression of genes encoding type I interferons (IFNs) and proinflammatory cytokines. KD of SERINC5 enhanced the replication of various viruses, suggesting that the potentiation of IFN and inflammatory cytokine signaling represents an additional antiviral response mediated by SERINC5. The SERINC (serine incorporator) proteins are host restriction factors that inhibit infection by HIV through their incorporation into virions. Here, we found that SERINC3 and SERINC5 exhibited additional antiviral activities by enhancing the expression of genes encoding type I interferons (IFNs) and nuclear factor κB (NF-κB) signaling. SERINC5 interacted with the outer mitochondrial membrane protein MAVS (mitochondrial antiviral signaling) and the E3 ubiquitin ligase and adaptor protein TRAF6, resulting in MAVS aggregation and polyubiquitylation of TRAF6. Knockdown of SERINC5 in target cells increased single-round HIV-1 infectivity, as well as infection by recombinant vesicular stomatitis virus (rVSV) bearing VSV-G or Ebola virus (EBOV) glycoproteins. Infection by an endemic Asian strain of Zika virus (ZIKV), FSS13025, was also enhanced by SERINC5 knockdown, suggesting that SERINC5 has direct antiviral activities in host cells in addition to the indirect inhibition mediated by its incorporation into virions. Further experiments suggested that the antiviral activity of SERINC5 was type I IFN–dependent. Together, these results highlight a previously uncharacterized function of SERINC proteins in promoting NF-κB inflammatory signaling and type I IFN production, thus contributing to its antiviral activities.

[1]  Y. Xiong,et al.  A Conserved Acidic-Cluster Motif in SERINC5 Confers Partial Resistance to Antagonism by HIV-1 Nef , 2020, Journal of Virology.

[2]  C. Robinson,et al.  A bipartite structural organization defines the SERINC family of HIV-1 restriction factors , 2019, Nature structural & molecular biology.

[3]  T. Noda,et al.  N4BP1 restricts HIV-1 and its inactivation by MALT1 promotes viral reactivation , 2019, Nature Microbiology.

[4]  I. Ahmad,et al.  The retroviral accessory proteins S2, Nef, and glycoMA use similar mechanisms for antagonizing the host restriction factor SERINC5 , 2019, The Journal of Biological Chemistry.

[5]  A. Feizpour,et al.  TIM-mediated inhibition of HIV-1 release is antagonized by Nef but potentiated by SERINC proteins , 2019, Proceedings of the National Academy of Sciences.

[6]  S. Chanda,et al.  HIV-1 Vpu is a potent transcriptional suppressor of NF-κB-elicited antiviral immune responses , 2019, eLife.

[7]  Laura E. Herring,et al.  O-GlcNAc Transferase Links Glucose Metabolism to MAVS-Mediated Antiviral Innate Immunity. , 2018, Cell host & microbe.

[8]  F. Mammano Decision letter: HIV-1 Vpu is a potent transcriptional suppressor of NF-κB-elicited antiviral immune responses , 2018 .

[9]  A. Chande,et al.  SERINC5 as a New Restriction Factor for Human Immunodeficiency Virus and Murine Leukemia Virus. , 2018, Annual review of virology.

[10]  Zhijian J. Chen,et al.  Detection of Microbial Infections Through Innate Immune Sensing of Nucleic Acids. , 2018, Annual review of microbiology.

[11]  Shilpi Sharma,et al.  An N-Glycosylated Form of SERINC5 Is Specifically Incorporated into HIV-1 Virions , 2018, Journal of Virology.

[12]  Shao-Cong Sun,et al.  Tumor Necrosis Factor Receptor-Associated Factor Regulation of Nuclear Factor κB and Mitogen-Activated Protein Kinase Pathways , 2018, Front. Immunol..

[13]  F. Kirchhoff,et al.  Multilayered and versatile inhibition of cellular antiviral factors by HIV and SIV accessory proteins. , 2018, Cytokine & growth factor reviews.

[14]  X. Qiu,et al.  HIV-1 Nef Antagonizes SERINC5 Restriction by Downregulation of SERINC5 via the Endosome/Lysosome System , 2018, Journal of Virology.

[15]  J. Cui,et al.  Tetherin Suppresses Type I Interferon Signaling by Targeting MAVS for NDP52-Mediated Selective Autophagic Degradation in Human Cells. , 2017, Molecular cell.

[16]  Chetan Sood,et al.  SERINC5 protein inhibits HIV-1 fusion pore formation by promoting functional inactivation of envelope glycoproteins , 2017, The Journal of Biological Chemistry.

[17]  Xueer Wang,et al.  The ubiquitin E3 ligase TRIM31 promotes aggregation and activation of the signaling adaptor MAVS through Lys63-linked polyubiquitination , 2016, Nature Immunology.

[18]  Shilei Ding,et al.  Effect of HIV-1 Env on SERINC5 Antagonism , 2016, Journal of Virology.

[19]  Delphine Muriaux,et al.  Functional Interplay Between Murine Leukemia Virus Glycogag, Serinc5, and Surface Glycoprotein Governs Virus Entry, with Opposite Effects on Gammaretroviral and Ebolavirus Glycoproteins , 2016, mBio.

[20]  O. Fackler,et al.  The Antagonism of HIV-1 Nef to SERINC5 Particle Infectivity Restriction Involves the Counteraction of Virion-Associated Pools of the Restriction Factor , 2016, Journal of Virology.

[21]  G. Learn,et al.  The Potency of Nef-Mediated SERINC5 Antagonism Correlates with the Prevalence of Primate Lentiviruses in the Wild. , 2016, Cell host & microbe.

[22]  G. Hartmann,et al.  Discriminating self from non-self in nucleic acid sensing , 2016, Nature Reviews Immunology.

[23]  S. Carpenter,et al.  S2 from equine infectious anemia virus is an infectivity factor which counteracts the retroviral inhibitors SERINC5 and SERINC3 , 2016, Proceedings of the National Academy of Sciences.

[24]  Ben Murrell,et al.  The Evolutionary Histories of Antiretroviral Proteins SERINC3 and SERINC5 Do Not Support an Evolutionary Arms Race in Primates , 2016, Journal of Virology.

[25]  M. Gack,et al.  Viral evasion of intracellular DNA and RNA sensing , 2016, Nature Reviews Microbiology.

[26]  O. Fackler Spotlight on HIV-1 Nef: SERINC3 and SERINC5 Identified as Restriction Factors Antagonized by the Pathogenesis Factor , 2015, Viruses.

[27]  C. Aiken HIV: Antiviral action countered by Nef , 2015, Nature.

[28]  S. Antonarakis,et al.  HIV-1 Nef promotes infection by excluding SERINC5 from virion incorporation , 2015, Nature.

[29]  Lina Sun,et al.  Structural Insights into Mitochondrial Antiviral Signaling Protein (MAVS)-Tumor Necrosis Factor Receptor-associated Factor 6 (TRAF6) Signaling* , 2015, The Journal of Biological Chemistry.

[30]  Yuanfei Wu,et al.  SERINC3 and SERINC5 restrict HIV-1 infectivity and are counteracted by Nef , 2015, Nature.

[31]  S. Hur,et al.  How RIG-I like receptors activate MAVS. , 2015, Current opinion in virology.

[32]  Sky W. Brubaker,et al.  Innate immune pattern recognition: a cell biological perspective. , 2015, Annual review of immunology.

[33]  N. Grishin,et al.  Phosphorylation of innate immune adaptor proteins MAVS, STING, and TRIF induces IRF3 activation , 2015, Science.

[34]  C. Van Lint,et al.  Differential Regulation of NF-κB-Mediated Proviral and Antiviral Host Gene Expression by Primate Lentiviral Nef and Vpu Proteins , 2015, Cell reports.

[35]  Shilei Ding,et al.  Primate lentiviruses are differentially inhibited by interferon-induced transmembrane proteins , 2014, Virology.

[36]  F. Kirchhoff,et al.  Emerging role of the host restriction factor tetherin in viral immune sensing. , 2013, Journal of molecular biology.

[37]  Zhijian J. Chen,et al.  MAVS recruits multiple ubiquitin E3 ligases to activate antiviral signaling cascades , 2013, eLife.

[38]  S. Neil,et al.  Innate Sensing of HIV-1 Assembly by Tetherin Induces NFκB-Dependent Proinflammatory Responses , 2012, Cell host & microbe.

[39]  P. Bates,et al.  Identification of Alternatively Translated Tetherin Isoforms with Differing Antiviral and Signaling Activities , 2012, PLoS pathogens.

[40]  J. Hiscott,et al.  Linear ubiquitination of NEMO negatively regulates the interferon antiviral response through disruption of the MAVS-TRAF3 complex. , 2012, Cell host & microbe.

[41]  Baek Kim,et al.  SAMHD1 restricts the replication of human immunodeficiency virus type 1 by depleting the intracellular pool of deoxynucleoside triphosphates , 2012, Nature Immunology.

[42]  S. Xiang,et al.  Critical Role of Leucine-Valine Change in Distinct Low pH Requirements for Membrane Fusion between Two Related Retrovirus Envelopes* , 2012, The Journal of Biological Chemistry.

[43]  Y. Kong,et al.  Mapping a dynamic innate immunity protein interaction network regulating type I interferon production. , 2011, Immunity.

[44]  Zhijian J. Chen,et al.  MAVS Forms Functional Prion-like Aggregates to Activate and Propagate Antiviral Innate Immune Response , 2011, Cell.

[45]  M. Karin,et al.  Expanding TRAF function: TRAF3 as a tri-faced immune regulator , 2011, Nature Reviews Immunology.

[46]  C. Aiken,et al.  Immunology: TRIM5 does double duty , 2011, Nature.

[47]  Jeremy Luban,et al.  TRIM5 is an innate immune sensor for the retrovirus capsid lattice , 2011, Nature.

[48]  Michael Emerman,et al.  Ancient Adaptive Evolution of Tetherin Shaped the Functions of Vpu and Nef in Human Immunodeficiency Virus and Primate Lentiviruses , 2010, Journal of Virology.

[49]  P. Bieniasz,et al.  Species-Specific Activity of HIV-1 Vpu and Positive Selection of Tetherin Transmembrane Domain Variants , 2009, PLoS pathogens.

[50]  E. Pietras,et al.  Regulation of antiviral responses by a direct and specific interaction between TRAF3 and Cardif , 2006, The EMBO journal.

[51]  S. Akira,et al.  Pathogen Recognition and Innate Immunity , 2006, Cell.

[52]  Ralf Bartenschlager,et al.  Cardif is an adaptor protein in the RIG-I antiviral pathway and is targeted by hepatitis C virus , 2005, Nature.

[53]  Osamu Takeuchi,et al.  IPS-1, an adaptor triggering RIG-I- and Mda5-mediated type I interferon induction , 2005, Nature Immunology.

[54]  Z. Zhai,et al.  VISA Is an Adapter Protein Required for Virus-Triggered IFN-β Signaling , 2005 .

[55]  Zhijian J. Chen,et al.  Identification and Characterization of MAVS, a Mitochondrial Antiviral Signaling Protein that Activates NF-κB and IRF3 , 2005, Cell.

[56]  Shizuo Akira,et al.  Shared and Unique Functions of the DExD/H-Box Helicases RIG-I, MDA5, and LGP2 in Antiviral Innate Immunity1 , 2005, The Journal of Immunology.

[57]  Michael Emerman,et al.  Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[58]  M. Emerman,et al.  Ancient Adaptive Evolution of the Primate Antiviral DNA-Editing Enzyme APOBEC3G , 2004, PLoS biology.

[59]  Ajit Chandea,et al.  S 2 from equine infectious anemia virus is an infectivity factor which counteracts the retroviral inhibitors SERINC 5 and SERINC 3 , 2017 .

[60]  Shao-Cong Sun,et al.  Non-canonical NF-κB signaling pathway , 2011, Cell Research.

[61]  Zhijian J. Chen,et al.  Identification and characterization of MAVS, a mitochondrial antiviral signaling protein that activates NF-kappaB and IRF 3. , 2005, Cell.