Molecular changes associated with the setting up of secondary growth in aspen.

Vascular secondary growth results from the activity of the vascular cambium, which produces secondary phloem and secondary xylem. By means of cDNA-amplified fragment length polymorphism (cDNA-AFLP) analysis along aspen stems, several potential regulatory genes involved in the progressive transition from primary to secondary growth were identified. A total of 83 unique transcript-derived fragments (TDFs) was found to be differentiated between the top and the bottom of the stem. An independent RT-PCR expression analysis validated the cDNA-AFLP profiles for 19 of the TDFs. Among these, seven correspond to new genes encoding putative regulatory proteins. Emphasis was laid upon two genes encoding, respectively, an AP2/ERF-like transcription factor (PtaERF1) and a RING finger protein (PtaRHE1); their differential expression was further confirmed by reverse northern analysis. In situ RT-PCR revealed that PtaERF1 was expressed in phloem tissue and that PtaRHE1 had a pronounced expression in ray initials and their derivatives within the cambial zone. These results suggest that these genes have a potential role in vascular tissue development and/or functioning.

[1]  P. Guzmán,et al.  Gene isolation inArabidopsis thaliana by conditional overexpression of cDNAs toxic toSaccharomyces cerevisiae: identification of a novel early response zinc-finger gene , 1996, Molecular and General Genetics MGG.

[2]  B. Sundberg,et al.  A Populus EST resource for plant functional genomics. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[3]  P. Ranocha,et al.  Multiple gene detection by in situ RT-PCR in isolated plant cells and tissues. , 2004, The Plant journal : for cell and molecular biology.

[4]  P. Nilsson,et al.  A High-Resolution Transcript Profile across the Wood-Forming Meristem of Poplar Identifies Potential Regulators of Cambial Stem Cell Identityw⃞ , 2004, The Plant Cell Online.

[5]  Sunchung Park,et al.  Plant Body Weight-Induced Secondary Growth in Arabidopsis and Its Transcription Phenotype Revealed by Whole-Transcriptome Profiling1[w] , 2004, Plant Physiology.

[6]  H. Fukuda Signals that control plant vascular cell differentiation , 2004, Nature Reviews Molecular Cell Biology.

[7]  Hongbo Zhang,et al.  Ectopic overexpression of tomato JERF3 in tobacco activates downstream gene expression and enhances salt tolerance , 2004, Plant Molecular Biology.

[8]  Kyung-Hwan Han,et al.  Arabidopsiswhole-transcriptome profiling defines the features of coordinated regulations that occur during secondary growth , 2004, Plant Molecular Biology.

[9]  O. Olsson,et al.  Characterization of a PttRPS18 promoter active in the vascular cambium region of hybrid aspen , 2003, Plant Molecular Biology.

[10]  W. Karłowski,et al.  The over-expression of an alfalfa RING-H2 gene induces pleiotropic effects on plant growth and development , 2003, Plant Molecular Biology.

[11]  V. Kapur,et al.  Novel gene expression profiles define the metabolic and physiological processes characteristic of wood and its extractive formation in a hardwood tree species, Robinia pseudoacacia , 2003, Plant Molecular Biology.

[12]  J. Grima-Pettenati,et al.  The vascular expression pattern directed by the Eucalyptus gunnii cinnamyl alcohol dehydrogenase EgCAD2 promoter is conserved among woody and herbaceous plant species , 2002, Plant Molecular Biology.

[13]  Björn Sundberg,et al.  Unravelling cell wall formation in the woody dicot stem , 2001, Plant Molecular Biology.

[14]  P. Guzmán,et al.  Early elicitor induction in members of a novel multigene family coding for highly related RING-H2 proteins in Arabidopsis thaliana , 1999, Plant Molecular Biology.

[15]  B. Sundberg,et al.  Liquid phase fluorescence in situ RT-PCR analysis for gene expression analysis in woody stems. , 2004, Plant biology.

[16]  R. Sederoff,et al.  Functional genomics and cell wall biosynthesis in loblolly pine , 2004, Plant Molecular Biology.

[17]  R. Hedrich,et al.  Isolation of AtSUC2 promoter-GFP-marked companion cells for patch-clamp studies and expression profiling. , 2003, The Plant journal : for cell and molecular biology.

[18]  G. K. Podila,et al.  Characterization of PTM5 in aspen trees: a MADS-box gene expressed during woody vascular development. , 2003, Gene.

[19]  J. Amselem,et al.  Towards deciphering phloem: a transcriptome analysis of the phloem of Apium graveolens. , 2003, The Plant journal : for cell and molecular biology.

[20]  T. Laux,et al.  Apical meristems: the plant's fountain of youth. , 2003, BioEssays : news and reviews in molecular, cellular and developmental biology.

[21]  J. Pech,et al.  New members of the tomato ERF family show specific expression pattern and diverse DNA‐binding capacity to the GCC box element , 2003, FEBS letters.

[22]  J. Fromm,et al.  Ultrastructural Changes in Cambial Cell Derivatives during Xylem Differentiation in Poplar , 2003 .

[23]  R. Simon,et al.  The DORNROSCHEN/ENHANCER OF SHOOT REGENERATION1 gene of Arabidopsis acts in the control of meristem ccll fate and lateral organ development. , 2003, The Plant cell.

[24]  W. Boerjan,et al.  Lignin biosynthesis. , 2003, Annual review of plant biology.

[25]  Shoshi Kikuchi,et al.  Visualization by comprehensive microarray analysis of gene expression programs during transdifferentiation of mesophyll cells into xylem cells , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[26]  Dimitra L. Milioni,et al.  Early Gene Expression Associated with the Commitment and Differentiation of a Plant Tracheary Element Is Revealed by cDNA–Amplified Fragment Length Polymorphism Analysis , 2002, The Plant Cell Online.

[27]  L. Hennig,et al.  Chromatin-Remodeling and Memory Factors. New Regulators of Plant Development , 2002, Plant Physiology.

[28]  J. Riechmann,et al.  Transcriptional Regulation: a Genomic Overview , 2002, The arabidopsis book.

[29]  N. Chaffey,et al.  Secondary xylem development in Arabidopsis: a model for wood formation. , 2002, Physiologia plantarum.

[30]  K. Shinozaki,et al.  DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression. , 2002, Biochemical and biophysical research communications.

[31]  R. Solano,et al.  Constitutive expression of ETHYLENE-RESPONSE-FACTOR1 in Arabidopsis confers resistance to several necrotrophic fungi. , 2002, The Plant journal : for cell and molecular biology.

[32]  B. Sundberg,et al.  A transcriptional roadmap to wood formation , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[33]  N. Dengler Regulation of Vascular Development , 2001, Journal of Plant Growth Regulation.

[34]  M. Hobe,et al.  Dependence of stem cell fate in Arabidopsis on a feedback loop regulated by CLV3 activity. , 2000, Science.

[35]  Chengsong Zhao,et al.  Exploiting secondary growth in Arabidopsis. Construction of xylem and bark cDNA libraries and cloning of three xylem endopeptidases. , 2000, Plant physiology.

[36]  K. Hammond-Kosack,et al.  cDNA-AFLP Reveals a Striking Overlap in Race-Specific Resistance and Wound Response Gene Expression Profiles , 2000, Plant Cell.

[37]  Heiko Schoof,et al.  The Stem Cell Population of Arabidopsis Shoot Meristems Is Maintained by a Regulatory Loop between the CLAVATA and WUSCHEL Genes , 2000, Cell.

[38]  K. Borden RING domains: master builders of molecular scaffolds? , 2000, Journal of molecular biology.

[39]  J. Bonnemain,et al.  Structure and functions of the vascular cambium. , 1999, Comptes rendus de l'Academie des sciences. Serie III, Sciences de la vie.

[40]  O. Olsson,et al.  Molecular characterisation of a novel plant homeobox gene expressed in the maturing xylem zone of Populus tremula x tremuloides. , 1998, The Plant journal : for cell and molecular biology.

[41]  H. Jespersen,et al.  Widespread occurrence of a highly conserved RING‐H2 zinc finger motif in the model plant Arabidopsis thaliana , 1998, FEBS letters.

[42]  E. Schäfer,et al.  CPRF4a, a novel plant bZIP protein of the CPRF family: comparative analyses of light-dependent expression, post-transcriptional regulation, nuclear import and heterodimerisation , 1998, Molecular and General Genetics MGG.

[43]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[44]  Peter R. Crane,et al.  The origin and early evolution of plants on land , 1997, Nature.

[45]  J. Šamaj,et al.  Cinnamyl Alcohol Dehydrogenase: Identification of New Sites of Promoter Activity in Transgenic Poplar , 1997, Plant physiology.

[46]  P. Freemont,et al.  Does this have a familiar RING? , 1996, Trends in biochemical sciences.

[47]  R. Van der Hoeven,et al.  Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development. , 1996, The Plant journal : for cell and molecular biology.

[48]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[49]  R. Funada,et al.  Biochemical and Cytochemical Cell Wall Changes Across the Cambial Zone , 1994 .

[50]  Dr. Philip R. Larson,et al.  The Vascular Cambium , 1994, Springer Series in Wood Science.

[51]  A. Hoekema,et al.  A small-scale procedure for the rapid isolation of plant RNAs. , 1989, Nucleic acids research.

[52]  A. ALLSOPP,et al.  Plant Anatomy , 1966, Nature.