Induction of Cytoplasmic Rods and Rings Structures by Inhibition of the CTP and GTP Synthetic Pathway in Mammalian Cells

Background Cytoplasmic filamentous rods and rings (RR) structures were identified using human autoantibodies as probes. In the present study, the formation of these conserved structures in mammalian cells and functions linked to these structures were examined. Methodology/Principal Findings Distinct cytoplasmic rods (∼3–10 µm in length) and rings (∼2–5 µm in diameter) in HEp-2 cells were initially observed in immunofluorescence using human autoantibodies. Co-localization studies revealed that, although RR had filament-like features, they were not enriched in actin, tubulin, or vimentin, and not associated with centrosomes or other known cytoplasmic structures. Further independent studies revealed that two key enzymes in the nucleotide synthetic pathway cytidine triphosphate synthase 1 (CTPS1) and inosine monophosphate dehydrogenase 2 (IMPDH2) were highly enriched in RR. CTPS1 enzyme inhibitors 6-diazo-5-oxo-L-norleucine and Acivicin as well as the IMPDH2 inhibitor Ribavirin exhibited dose-dependent induction of RR in >95% of cells in all cancer cell lines tested as well as mouse primary cells. RR formation by lower concentration of Ribavirin was enhanced in IMPDH2-knockdown HeLa cells whereas it was inhibited in GFP-IMPDH2 overexpressed HeLa cells. Interestingly, RR were detected readily in untreated mouse embryonic stem cells (>95%); upon retinoic acid differentiation, RR disassembled in these cells but reformed when treated with Acivicin. Conclusions/Significance RR formation represented response to disturbances in the CTP or GTP synthetic pathways in cancer cell lines and mouse primary cells and RR are the convergence physical structures in these pathways. The availability of specific markers for these conserved structures and the ability to induce formation in vitro will allow further investigations in structure and function of RR in many biological systems in health and diseases.

[1]  A. I.,et al.  Neural Field Continuum Limits and the Structure–Function Partitioning of Cognitive–Emotional Brain Networks , 2023, Biology.

[2]  L. Pinkus Glutamine binding sites. , 1977, Methods in enzymology.

[3]  L. Pinkus [45] Glutamine binding sites , 1977 .

[4]  M. Willingham,et al.  A novel fibrillar structure in cultured cells detected by a monoclonal antibody. , 1987, Experimental cell research.

[5]  E. Tan Autoantibodies in pathology and cell biology , 1991, Cell.

[6]  I. Raška,et al.  Human autoantibody to a novel protein of the nuclear coiled body: immunological characterization and cDNA cloning of p80-coilin , 1991, The Journal of experimental medicine.

[7]  A. Allison,et al.  Mechanisms of Action of Mycophenolic Acid , 1993, Annals of the New York Academy of Sciences.

[8]  E. Chan,et al.  Molecular characterization of two human autoantigens: unique cDNAs encoding 95- and 160-kD proteins of a putative family in the Golgi complex , 1993, The Journal of experimental medicine.

[9]  E. Tan,et al.  Autoantibodies to a novel cell cycle-regulated protein that accumulates in the nuclear matrix during S phase and is localized in the kinetochores and spindle midzone during mitosis. , 1993, Journal of cell science.

[10]  Y. Natsumeda,et al.  Characterization of human type I and type II IMP dehydrogenases. , 1993, The Journal of biological chemistry.

[11]  E. Tan,et al.  Autoimmunity to the cell cycle-dependent centromere protein p330d/CENP-F in disorders associated with cell proliferation. , 1995, Journal of autoimmunity.

[12]  M. Satoh,et al.  Distinctive immune response patterns of human and murine autoimmune sera to U1 small nuclear ribonucleoprotein C protein. , 1996, The Journal of clinical investigation.

[13]  M. Bergström,et al.  A mechanism behind the antitumour effect of 6-diazo-5-oxo-L-norleucine (DON): disruption of mitochondria. , 1999, European journal of cancer.

[14]  P. Franchetti,et al.  Nucleoside and non-nucleoside IMP dehydrogenase inhibitors as antitumor and antiviral agents. , 1999, Current medicinal chemistry.

[15]  A. Chabes,et al.  Trypanosoma brucei CTP synthetase: A target for the treatment of African sleeping sickness , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[16]  S. Tenenbaum,et al.  A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles. , 2002, Molecular biology of the cell.

[17]  E. Chan,et al.  Fragmentation of Golgi complex and Golgi autoantigens during apoptosis and necrosis , 2002, Arthritis research.

[18]  Rong Liu,et al.  The effect of ribavirin and IMPDH inhibitors on hepatitis C virus subgenomic replicon RNA. , 2003, Virology.

[19]  Wei Li,et al.  Actin-based endosome and phagosome rocketing in macrophages: activation by the secretagogue antagonists lanthanum and zinc. , 2003, Cell motility and the cytoskeleton.

[20]  Aggregation of embryonic stem cells induces Nanog repression and primitive endoderm differentiation , 2004, Journal of Cell Science.

[21]  K. Coombs,et al.  Mycophenolic acid inhibits avian reovirus replication. , 2004, Antiviral research.

[22]  Orphan Nuclear Receptor GCNF Is Required for the Repression of Pluripotency Genes during Retinoic Acid-Induced Embryonic Stem Cell Differentiation , 2005, Molecular and Cellular Biology.

[23]  D. Margolis,et al.  Ex vivo modeling of the effects of mycophenolic acid on HIV infection: considerations for antiviral therapy. , 2005, AIDS research and human retroviruses.

[24]  Beverly S Mitchell,et al.  Regulation of the Interaction of Inosine Monophosphate Dehydrogenase with Mycophenolic Acid by GTP* , 2006, Journal of Biological Chemistry.

[25]  E. Chan,et al.  Autoimmune targeting of key components of RNA interference , 2006, Arthritis research & therapy.

[26]  P. Nordlund,et al.  Structure of the synthetase domain of human CTP synthetase, a target for anticancer therapy. , 2006, Acta crystallographica. Section F, Structural biology and crystallization communications.

[27]  E. Chan,et al.  Small interfering RNA-mediated silencing induces target-dependent assembly of GW/P bodies. , 2007, Molecular biology of the cell.

[28]  Roger A Hoskins,et al.  The Carnegie Protein Trap Library: A Versatile Tool for Drosophila Developmental Studies , 2007, Genetics.

[29]  Z. Paroo,et al.  A small molecule enhances RNA interference and promotes microRNA processing , 2008, Nature Biotechnology.

[30]  P. Satir,et al.  The primary cilium coordinates signaling pathways in cell cycle control and migration during development and tissue repair. , 2008, Current topics in developmental biology.

[31]  N. Sato,et al.  Identification of Cardiac-Specific Myosin Light Chain Kinase , 2008, Circulation research.

[32]  Yuzhang Wu,et al.  Identification of IMPDH2 as a tumor-associated antigen in colorectal cancer using immunoproteomics analysis , 2009, International Journal of Colorectal Disease.

[33]  E. Chan,et al.  Optimization of immunoprecipitation–western blot analysis in detecting GW182-associated components of GW/P bodies , 2009, Nature Protocols.

[34]  Brian K. Sato,et al.  Identification of novel filament-forming proteins in Saccharomyces cerevisiae and Drosophila melanogaster , 2010, The Journal of cell biology.

[35]  Ji-Long Liu Intracellular compartmentation of CTP synthase in Drosophila. , 2010, Journal of genetics and genomics = Yi chuan xue bao.

[36]  M. Ramer,et al.  A New Organellar Complex in Rat Sympathetic Neurons , 2010, PloS one.

[37]  G. Jensen,et al.  The metabolic enzyme CTP synthase forms cytoskeletal filaments , 2010, Nature Cell Biology.

[38]  Kaleb M. Pauley,et al.  Formation of GW/P bodies as marker for microRNA-mediated regulation of innate immune signaling in THP-1 cells , 2009, Immunology and cell biology.

[39]  Ji-Long Liu,et al.  Glutamine analogs promote cytoophidium assembly in human and Drosophila cells. , 2011, Journal of genetics and genomics = Yi chuan xue bao.

[40]  Ji-Long Liu The enigmatic cytoophidium: Compartmentation of CTP synthase via filament formation , 2011, BioEssays : news and reviews in molecular, cellular and developmental biology.

[41]  E. Chan,et al.  Cytoplasmic Rods and Rings Autoantibodies Developed during Pegylated Interferon and Ribavirin Therapy in Patients with Chronic Hepatitis C , 2012, Antiviral therapy.