An integrated systems biology approach identifies positive cofactor 4 as a factor that increases reprogramming efficiency
暂无分享,去创建一个
Insuk Lee | Hyung Joon Kim | Sohyun Hwang | Junghyun Jo | Dong Ryul Lee | Heonjong Han | Insuk Lee | Sohyun Hwang | H. J. Kim | J. Lee | Heonjong Han | J. Jo | Soomin Hong | Soomin Hong | Jeoung Eun Lee | Sung-Geum Lee | Ahmi Baek | Jin Il Lee | A. Baek | Sung-Geum Lee
[1] S. Mitalipov,et al. Human Embryonic Stem Cells Derived by Somatic Cell Nuclear Transfer , 2013, Cell.
[2] Fei Yi,et al. Tcf3 Functions as a Steady‐State Limiter of Transcriptional Programs of Mouse Embryonic Stem Cell Self‐Renewal , 2008, Stem cells.
[3] Jose M Polo,et al. Phases of reprogramming. , 2014, Stem cell research.
[4] Jialiang Liang,et al. A mesenchymal-to-epithelial transition initiates and is required for the nuclear reprogramming of mouse fibroblasts. , 2010, Cell stem cell.
[5] Rafael A. Irizarry,et al. A framework for oligonucleotide microarray preprocessing , 2010, Bioinform..
[6] I. Lemischka,et al. Delayed differentiation in embryonic stem cells and mesodermal progenitors in the absence of CtBP2 , 2010, Mechanisms of Development.
[7] Rudolf Jaenisch,et al. Mechanisms and models of somatic cell reprogramming , 2013, Nature Reviews Genetics.
[8] Thomas Lufkin,et al. Zfp206 Is a Transcription Factor That Controls Pluripotency of Embryonic Stem Cells , 2007, Stem cells.
[9] Rafael A. Irizarry,et al. Bioinformatics and Computational Biology Solutions using R and Bioconductor , 2005 .
[10] Benjamin M. Bolstad,et al. affy - analysis of Affymetrix GeneChip data at the probe level , 2004, Bioinform..
[11] Jonghwan Kim,et al. Transcription Elongation Factor Tcea3 Regulates the Pluripotent Differentiation Potential of Mouse Embryonic Stem Cells Via the Lefty1‐Nodal‐Smad2 Pathway , 2013, Stem cells.
[12] T. Mikkelsen,et al. Dissecting direct reprogramming through integrative genomic analysis , 2008, Nature.
[13] Thomas Vierbuchen,et al. Direct Lineage Conversions: Unnatural but useful? , 2011, Nature Biotechnology.
[14] Qikai Xu,et al. A genome-wide RNAi screen identifies a new transcriptional module required for self-renewal. , 2009, Genes & development.
[15] E. Morrisey,et al. How microRNAs facilitate reprogramming to pluripotency , 2012, Journal of Cell Science.
[16] Erik L. L. Sonnhammer,et al. Inparanoid: a comprehensive database of eukaryotic orthologs , 2004, Nucleic Acids Res..
[17] David L. A. Wood,et al. Divergent reprogramming routes lead to alternative stem-cell states , 2014, Nature.
[18] X. Tian,et al. JAK-STAT3 and somatic cell reprogramming , 2013, JAK-STAT.
[19] Sandy L. Klemm,et al. Single-Cell Expression Analyses during Cellular Reprogramming Reveal an Early Stochastic and a Late Hierarchic Phase , 2012, Cell.
[20] Qi-Long Ying,et al. Gbx2, a LIF/Stat3 target, promotes reprogramming to and retention of the pluripotent ground state , 2013, Journal of Cell Science.
[21] J. Wrana,et al. A late transition in somatic cell reprogramming requires regulators distinct from the pluripotency network. , 2012, Cell stem cell.
[22] G. Daley,et al. Selective Blockade of MicroRNA Processing by Lin28 , 2008, Science.
[23] J. Wrana,et al. Functional genomics reveals a BMP-driven mesenchymal-to-epithelial transition in the initiation of somatic cell reprogramming. , 2010, Cell stem cell.
[24] E. Marcotte,et al. Systematic prediction of gene function in Arabidopsis thaliana using a probabilistic functional gene network , 2011, Nature Protocols.
[25] Giselle Lee. "The Developmental Capacity of Nuclei Taken from Intestinal Epithelium Cells of Feeding Tadpoles" (1962), by John B. Gurdon , 2017 .
[26] Dong Ryul Lee,et al. Human somatic cell nuclear transfer using adult cells. , 2014, Cell stem cell.
[27] S. Yamanaka,et al. Induction of Pluripotent Stem Cells from Mouse Embryonic and Adult Fibroblast Cultures by Defined Factors , 2006, Cell.
[28] P. Labosky,et al. Regulation of Embryonic Stem Cell Self‐Renewal and Pluripotency by Foxd3 , 2008, Stem cells.
[29] Dong Ryul Lee,et al. Identification of an intermediate state as spermatogonial stem cells reprogram to multipotent cells , 2010, Molecules and cells.
[30] J. Dadoune. Pluripotency of a single spermatogonial stem cell in mice. , 2008 .
[31] Takashi Aoi,et al. Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts , 2008, Nature Biotechnology.
[32] N. Geijsen,et al. Uncovering the true identity of naïve pluripotent stem cells. , 2013, Trends in cell biology.
[33] Herbert Schulz,et al. A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity. , 2009, Cell stem cell.
[34] H. Schöler,et al. Zfp296 Is a Novel, Pluripotent-Specific Reprogramming Factor , 2012, PloS one.
[35] Terence P. Speed,et al. A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods , 2009, Bioinform..
[36] Marius Wernig,et al. c-Myc is dispensable for direct reprogramming of mouse fibroblasts. , 2008, Cell stem cell.
[37] Juan M. Vaquerizas,et al. A census of human transcription factors: function, expression and evolution , 2009, Nature Reviews Genetics.
[38] N. D. Clarke,et al. A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity , 2010, Nature.
[39] K. Hochedlinger,et al. Induced pluripotency: history, mechanisms, and applications. , 2010, Genes & development.
[40] S. Ramaswamy,et al. A Molecular Roadmap of Reprogramming Somatic Cells into iPS Cells , 2012, Cell.
[41] Stuart H. Orkin,et al. A protein interaction network for pluripotency of embryonic stem cells , 2006, Nature.
[42] Chun Xing Li,et al. Tgif1 Regulates Quiescence and Self-Renewal of Hematopoietic Stem Cells , 2013, Molecular and Cellular Biology.
[43] T. Rana,et al. Discovery of Nonsteroidal Anti‐Inflammatory Drug and Anticancer Drug Enhancing Reprogramming and Induced Pluripotent Stem Cell Generation , 2011, Stem cells.
[44] A. Simeone,et al. Otx2 is an intrinsic determinant of the embryonic stem cell state and is required for transition to a stable epiblast stem cell condition , 2013, Development.
[45] Matko Bosnjak,et al. REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms , 2011, PloS one.
[46] M. Oshimura,et al. Generation of Pluripotent Stem Cells from Neonatal Mouse Testis , 2004, Cell.
[47] N. Benvenisty,et al. Human oocytes reprogram adult somatic nuclei of a type 1 diabetic to diploid pluripotent stem cells , 2014, Nature.
[48] John D. Storey. A direct approach to false discovery rates , 2002 .
[49] G. Pan,et al. MicroRNA-145 Regulates OCT4, SOX2, and KLF4 and Represses Pluripotency in Human Embryonic Stem Cells , 2009, Cell.
[50] F. van Roy,et al. Role of cell–cell adhesion complexes in embryonic stem cell biology , 2014, Journal of Cell Science.
[51] Debbie L C van den Berg,et al. An Oct4-Centered Protein Interaction Network in Embryonic Stem Cells , 2010, Cell stem cell.
[52] Wei Wu,et al. Dax1 and Nanog act in parallel to stabilize mouse embryonic stem cells and induced pluripotency , 2014, Nature Communications.
[53] E. Marcotte,et al. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. , 2011, Genome research.
[54] Jeroen S. van Zon,et al. Direct cell reprogramming is a stochastic process amenable to acceleration , 2009, Nature.
[55] P. Geurts,et al. Inferring Regulatory Networks from Expression Data Using Tree-Based Methods , 2010, PloS one.
[56] Austin G Smith,et al. Conversion of embryonic stem cells into neuroectodermal precursors in adherent monoculture , 2003, Nature Biotechnology.
[57] G. Hong,et al. Nucleic Acids Research , 2015, Nucleic Acids Research.
[58] Marcos J. Araúzo-Bravo,et al. Chromatin-Remodeling Components of the BAF Complex Facilitate Reprogramming , 2010, Cell.
[59] M. Babu,et al. An Expanded Oct4 Interaction Network: Implications for Stem Cell Biology, Development, and Disease , 2010, Cell stem cell.
[60] Janet Rossant,et al. Krüppel-like factor 5 is essential for blastocyst development and the normal self-renewal of mouse ESCs. , 2008, Cell stem cell.
[61] K. Hochedlinger,et al. Tgfβ Signal Inhibition Cooperates in the Induction of iPSCs and Replaces Sox2 and cMyc , 2009, Current Biology.
[62] J. Davis. Bioinformatics and Computational Biology Solutions Using R and Bioconductor , 2007 .
[63] J. Kawai,et al. A genome-wide and nonredundant mouse transcription factor database. , 2004, Biochemical and biophysical research communications.
[64] J. Nichols,et al. Naive and primed pluripotent states. , 2009, Cell stem cell.