Computing Genome Edit Distances using Domain-Independent Planning

[1]  Bernard M. E. Moret,et al.  An Empirical Comparison of Phylogenetic Methods on Chloroplast Gene Order Data in Campanulaceae , 2000 .

[2]  D. Sankoff,et al.  Gene Order Breakpoint Evidence in Animal Mitochondrial Phylogeny , 1999, Journal of Molecular Evolution.

[3]  Bernhard Nebel,et al.  In Defense of PDDL Axioms , 2003, IJCAI.

[4]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[5]  Esra Erdem,et al.  Genome Rearrangement and Planning: Revisited , 2010, ICAPS.

[6]  D. Sankoff,et al.  Parametric genome rearrangement. , 1996, Gene.

[7]  Jussi Rintanen.  Heuristics for Planning with SAT and Expressive Action Definitions , 2011, ICAPS.

[8]  Bernhard Nebel,et al.  On the Compilability and Expressive Power of Propositional Planning Formalisms , 2000, J. Artif. Intell. Res..

[9]  Pavel A. Pevzner,et al.  Transforming Cabbage into Turnip: Polynomial Algorithm for Sorting Signed Permutations by Reversals , 1999, J. ACM.

[10]  Esra Erdem,et al.  Genome Rearrangement and Planning , 2005, AAAI.

[11]  Silvia Richter,et al.  The LAMA Planner: Guiding Cost-Based Anytime Planning with Landmarks , 2010, J. Artif. Intell. Res..

[12]  J. Boore,et al.  Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. , 1998, Current opinion in genetics & development.

[13]  D. Sankoff,et al.  Gene order comparisons for phylogenetic inference: evolution of the mitochondrial genome. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[14]  J. Boore,et al.  Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: duplication and nonrandom loss. , 2002, Molecular biology and evolution.

[15]  J. Nadeau,et al.  Lengths of chromosomal segments conserved since divergence of man and mouse. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[16]  B. Snel,et al.  Genome trees and the nature of genome evolution. , 2005, Annual review of microbiology.