Peptide and protein quantification: A map of the minefield
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[1] A. Schmidt,et al. A novel strategy for quantitative proteomics using isotope‐coded protein labels , 2005, Proteomics.
[2] Knut Reinert,et al. A geometric approach for the alignment of liquid chromatography - mass spectrometry data , 2007, ISMB/ECCB.
[3] P. O’Farrell. The pre‐omics era: The early days of two‐dimensional gels , 2008, Proteomics.
[4] Hiroyuki Kaji,et al. STEM: a software tool for large-scale proteomic data analyses. , 2005, Journal of proteome research.
[5] Chris F. Taylor,et al. A common open representation of mass spectrometry data and its application to proteomics research , 2004, Nature Biotechnology.
[6] E. Deutsch. mzML: A single, unifying data format for mass spectrometer output , 2008, Proteomics.
[7] Ruedi Aebersold,et al. A Software Suite for the Generation and Comparison of Peptide Arrays from Sets of Data Collected by Liquid Chromatography-Mass Spectrometry*S , 2005, Molecular & Cellular Proteomics.
[8] D. Jenden,et al. Selected ion monitoring in pharmacology. , 1979, Biochemical pharmacology.
[9] I. Papayannopoulos,et al. The interpretation of collision‐induced dissociation tandem mass spectra of peptides , 1996 .
[10] Knut Reinert,et al. High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques , 2005, Pacific Symposium on Biocomputing.
[11] R. Aebersold,et al. Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry , 2001, Nature Biotechnology.
[12] M. Miyagi,et al. Proteolytic 18O-labeling strategies for quantitative proteomics. , 2007, Mass spectrometry reviews.
[13] Lennart Martens,et al. A la carte proteomics with an emphasis on gel‐free techniques , 2007, Proteomics.
[14] M. Mann,et al. Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics* , 2002, Molecular & Cellular Proteomics.
[15] Barbara Sitek,et al. Study of Early Leaf Senescence in Arabidopsis thaliana by Quantitative Proteomics Using Reciprocal 14N/15N Labeling and Difference Gel Electrophoresis*S , 2008, Molecular & Cellular Proteomics.
[16] B W Gibson,et al. Low-mass ions produced from peptides by high-energy collision-induced dissociation in tandem mass spectrometry , 1993, Journal of the American Society for Mass Spectrometry.
[17] Damon May,et al. Software platform for rapidly creating computational tools for mass spectrometry-based proteomics. , 2009, Journal of proteome research.
[18] J. Yates,et al. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. , 2004, Analytical chemistry.
[19] R. Aebersold,et al. A uniform proteomics MS/MS analysis platform utilizing open XML file formats , 2005, Molecular systems biology.
[20] Karl Mechtler,et al. MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data , 2007, BMC Bioinformatics.
[21] Jean-Charles Sanchez,et al. MSight: An image analysis software for liquid chromatography‐mass spectrometry , 2005, Proteomics.
[22] Navdeep Jaitly,et al. Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data , 2009, BMC Bioinformatics.
[23] Steffen Neumann,et al. Highly sensitive feature detection for high resolution LC/MS , 2008, BMC Bioinformatics.
[24] H. Christofk,et al. A label‐free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen , 2008, Proteomics.
[25] Andrew H. Thompson,et al. Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. , 2003, Analytical chemistry.
[26] R. Aebersold,et al. Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry. , 2003, Analytical chemistry.
[27] K. Parker,et al. Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents*S , 2004, Molecular & Cellular Proteomics.
[28] Lennart Martens,et al. Peptizer, a Tool for Assessing False Positive Peptide Identifications and Manually Validating Selected Results*S , 2008, Molecular & Cellular Proteomics.
[29] Richard D. Smith,et al. Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline. , 2006, Analytical chemistry.
[30] S. Gygi,et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags , 1999, Nature Biotechnology.
[31] Lennart Martens,et al. Do we want our data raw? Including binary mass spectrometry data in public proteomics data repositories , 2005, Proteomics.
[32] Lukas N. Mueller,et al. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data. , 2008, Journal of proteome research.
[33] Wen-Lian Hsu,et al. Multi-Q: a fully automated tool for multiplexed protein quantitation. , 2006, Journal of proteome research.
[34] Knut Reinert,et al. TOPP - the OpenMS proteomics pipeline , 2007, Bioinform..
[35] K. Gevaert,et al. Global differential non-gel proteomics by quantitative and stable labeling of tryptic peptides with oxygen-18. , 2004, Journal of proteome research.
[36] R. Aebersold,et al. Mass spectrometry-based proteomics , 2003, Nature.
[37] M. Mann,et al. Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein*S , 2005, Molecular & Cellular Proteomics.
[38] Lukas N. Mueller,et al. SuperHirn – a novel tool for high resolution LC‐MS‐based peptide/protein profiling , 2007, Proteomics.
[39] Thomas A Neubert,et al. Automated Comparative Proteomics Based on Multiplex Tandem Mass Spectrometry and Stable Isotope Labeling * , 2006, Molecular & Cellular Proteomics.
[40] M. Mann,et al. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.
[41] Waltraud X. Schulze,et al. A Novel Proteomic Screen for Peptide-Protein Interactions* , 2004, Journal of Biological Chemistry.
[42] L Moller,et al. "A la carte". , 2021, Nursing mirror and midwives journal.
[43] F. McLafferty,et al. High-resolution electrospray mass spectra of large molecules , 1991 .
[44] F. McLafferty,et al. Automated reduction and interpretation of , 2000, Journal of the American Society for Mass Spectrometry.
[45] Matej Oresic,et al. MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data , 2006, Bioinform..
[46] John D. Venable,et al. Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra , 2004, Nature Methods.
[47] Robert E. Kearney,et al. A HUPO test sample study reveals common problems in mass spectrometry-based proteomics , 2009, Nature Methods.
[48] R. Aebersold,et al. Selected reaction monitoring for quantitative proteomics: a tutorial , 2008, Molecular systems biology.
[49] Navdeep Jaitly,et al. VIPER: an advanced software package to support high-throughput LC-MS peptide identification , 2007, Bioinform..
[50] J. Miller,et al. The effects of shared peptides on protein quantitation in label-free proteomics by LC/MS/MS. , 2008, Journal of proteome research.
[51] M. Gorenstein,et al. Quantitative proteomic analysis by accurate mass retention time pairs. , 2005, Analytical chemistry.
[52] M. Mann,et al. A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC) , 2006, Nature Protocols.
[53] Michael Olivier,et al. ZoomQuant: An application for the quantitation of stable isotope labeled peptides , 2005, Journal of the American Society for Mass Spectrometry.
[54] Knut Reinert,et al. OpenMS – An open-source software framework for mass spectrometry , 2008, BMC Bioinformatics.
[55] T. Shaler,et al. Quantification of proteins and metabolites by mass spectrometry without isotopic labeling or spiked standards. , 2003, Analytical chemistry.
[56] S. Gygi,et al. Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[57] C. Bessant,et al. i-Tracker: For quantitative proteomics using iTRAQ™ , 2005, BMC Genomics.
[58] E. Marchioni,et al. Quantitative analysis of beta-sitosterol oxides induced in vegetable oils by natural sunlight, artificially generated light, and irradiation. , 2006, Journal of agricultural and food chemistry.
[59] Robert J Beynon,et al. Metabolic Labeling of Proteins for Proteomics* , 2005, Molecular & Cellular Proteomics.
[60] Albert Sickmann,et al. Precise protein quantification based on peptide quantification using iTRAQ™ , 2007, BMC Bioinformatics.