High Rate of Chimeric Gene Origination by Retroposition in Plant Genomes[W]
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Jun Wang | Søren Vang | Dongyuan Liu | Hongkun Zheng | Gane Ka-Shu Wong | Manyuan Long | Guojie Zhang | Chuanzhu Fan | Jun Li | Zhengqiu Cai | Jianguo Zhang | Jun Li | Dongyuan Liu | Zhike Lu | Jianguo Zhang | Hongkun Zheng | G. Wong | Wen Wang | M. Long | Jun Wang | C. Fan | Junjie Shi | Zhengqiu Cai | Zhike Lu | Wen Wang | Junjie Shi | Guojie Zhang | Søren Vang | Chuanzhu Fan
[1] W. Richard McCombie,et al. Sorghum Genome Sequencing by Methylation Filtration , 2005, PLoS biology.
[2] D. Mccormick. Sequence the Human Genome , 1986, Bio/Technology.
[3] J. Jurka,et al. Repeats in genomic DNA: mining and meaning. , 1998, Current opinion in structural biology.
[4] J. Kawai,et al. Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice , 2003, Science.
[5] H. Kazazian. Mobile Elements: Drivers of Genome Evolution , 2004, Science.
[6] J. Bennetzen,et al. Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[7] S. Nisole,et al. A Trim5-cyclophilin A fusion protein found in owl monkey kidney cells can restrict HIV-1. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[8] J. V. Moran,et al. Exon shuffling by L1 retrotransposition. , 1999, Science.
[9] D. Charlesworth,et al. The evolution of the alcohol dehydrogenase gene family by loss of introns in plants of the genus Leavenworthia (Brassicaceae). , 1998, Molecular biology and evolution.
[10] Dawei Li,et al. The Genomes of Oryza sativa: A History of Duplications , 2005, PLoS biology.
[11] G. Karpen,et al. The case for epigenetic effects on centromere identity and function. , 1997, Trends in genetics : TIG.
[12] Kevin R. Thornton,et al. Retroposed new genes out of the X in Drosophila. , 2002, Genome research.
[13] Mark Gerstein,et al. Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome. , 2003, Genome research.
[14] M. Boguski,et al. dbEST — database for “expressed sequence tags” , 1993, Nature Genetics.
[15] J. Luban,et al. Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1 , 2004, Nature.
[16] Jianxin Ma,et al. Rapid recent growth and divergence of rice nuclear genomes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[17] J. Brosius,et al. Retroposons--seeds of evolution. , 1991, Science.
[18] S. L. Wong,et al. Extensive Gene Traffic on the Mammalian X Chromosome , 2022 .
[19] K. Tamura,et al. A Novel Chimeric Gene, siren, With Retroposed Promoter Sequence in the Drosophila bipectinata Complex , 2005, Genetics.
[20] Jian Wang,et al. A microarray analysis of the rice transcriptome and its comparison to Arabidopsis. , 2005, Genome research.
[21] Stilianos Arhondakis,et al. Base composition and expression level of human genes. , 2004, Gene.
[22] Timothy B. Stockwell,et al. The Sequence of the Human Genome , 2001, Science.
[23] Henrik Kaessmann,et al. Sex Chromosomes and Male Functions: Where Do New Genes Go? , 2004, Cell cycle.
[24] J. Bennetzen,et al. Transposable elements, gene creation and genome rearrangement in flowering plants. , 2005, Current opinion in genetics & development.
[25] Jennifer Daub,et al. Expressed sequence tags: medium-throughput protocols. , 2004, Methods in molecular biology.
[26] H. Saedler,et al. Cin4, an insert altering the structure of the A1 gene in Zea mays, exhibits properties of nonviral retrotransposons , 1987, The EMBO journal.
[27] Ziheng Yang,et al. PAML: a program package for phylogenetic analysis by maximum likelihood , 1997, Comput. Appl. Biosci..
[28] Corbin D. Jones,et al. Parallel evolution of chimeric fusion genes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[29] M T Clegg,et al. Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[30] M. Nei,et al. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. , 1986, Molecular biology and evolution.
[31] N. Vinckenbosch,et al. Evolutionary fate of retroposed gene copies in the human genome. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[32] J. McDonald,et al. Long terminal repeat retrotransposons of Oryza sativa , 2002, Genome Biology.
[33] Kevin R. Thornton,et al. The origin of new genes: glimpses from the young and old , 2003, Nature Reviews Genetics.
[34] J. Bedell,et al. Reduced representation sequencing: a success in maize and a promise for other plant genomes. , 2005, BioEssays : news and reviews in molecular, cellular and developmental biology.
[35] E. Birney,et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs , 2002, Nature.
[36] R. Durbin,et al. GeneWise and Genomewise. , 2004, Genome research.
[37] References , 1971 .
[38] E. Ostertag,et al. Transduction of 3'-flanking sequences is common in L1 retrotransposition. , 2000, Human molecular genetics.
[39] J. Bennetzen,et al. Plant retrotransposons. , 1999, Annual review of genetics.
[40] J Quackenbush,et al. Enrichment of Gene-Coding Sequences in Maize by Genome Filtration , 2003, Science.
[41] John F. McDonald,et al. LTR_STRUC: a novel search and identification program for LTR retrotransposons , 2003, Bioinform..
[42] Ram Samudrala,et al. Mouse transcriptome: Neutral evolution of ‘non-coding’ complementary DNAs , 2004, Nature.
[43] M. Boguski,et al. Frequent human genomic DNA transduction driven by LINE-1 retrotransposition. , 2000, Genome research.
[44] Gynheung An,et al. The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice , 2003, Plant Molecular Biology.
[45] M. Morgante,et al. Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize , 2005, Nature Genetics.
[46] M. Long,et al. Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. , 1993, Science.
[47] Yujun Zhang,et al. Computational Identification of 69 Retroposons in Arabidopsis1[w] , 2005, Plant Physiology.
[48] Wen-Hsiung Li,et al. The K(A)/K(S) ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study. , 2002, Genome research.
[49] L. Duret,et al. Nature and structure of human genes that generate retropseudogenes. , 2000, Genome research.
[50] E. Nevo,et al. Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[51] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[52] D. Labie,et al. Molecular Evolution , 1991, Nature.
[53] Richard S. J. Frackowiak,et al. Neurolinguistics: Structural plasticity in the bilingual brain , 2004, Nature.
[54] Jef D. Boeke,et al. Human L1 Retrotransposition: cisPreference versus trans Complementation , 2001, Molecular and Cellular Biology.
[55] G. Drouin,et al. Independent gene evolution in the potato actin gene family demonstrated by phylogenetic procedures for resolving gene conversions and the phylogeny of angiosperm actin genes , 1990, Journal of Molecular Evolution.
[56] Jianxin Ma,et al. Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice. , 2004, Genome research.
[57] Richard C. Moore,et al. The early stages of duplicate gene evolution , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[58] E. Ostertag,et al. Biology of mammalian L1 retrotransposons. , 2001, Annual review of genetics.
[59] The Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.
[60] Takuji Sasaki,et al. The map-based sequence of the rice genome , 2005, Nature.
[61] R. Martienssen,et al. Differential Regulation of Strand-Specific Transcripts from Arabidopsis Centromeric Satellite Repeats , 2005, PLoS genetics.
[62] B. Charlesworth,et al. Steps in the evolution of heteromorphic sex chromosomes , 2005, Heredity.
[63] Thierry Heidmann,et al. Human LINE retrotransposons generate processed pseudogenes , 2000, Nature Genetics.
[64] J. Bennetzen,et al. Structure and coding properties of Bs1, a maize retrovirus-like transposon. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[65] D. Petrov,et al. High intrinsic rate of DNA loss in Drosophila , 1996, Nature.
[66] A. Reymond,et al. Emergence of Young Human Genes after a Burst of Retroposition in Primates , 2005, PLoS biology.
[67] Sean R. Eddy,et al. Pack-MULE transposable elements mediate gene evolution in plants , 2004, Nature.
[68] E. Kellogg,et al. Evolutionary history of the grasses. , 2001, Plant physiology.
[69] A. Gentles,et al. Retroposition of processed pseudogenes: the impact of RNA stability and translational control. , 2006, Trends in genetics : TIG.
[70] M. Long,et al. Evolving protein functional diversity in new genes of Drosophila. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[71] L. Patthy. Genome evolution and the evolution of exon-shuffling--a review. , 1999, Gene.
[72] J. Bennetzen,et al. Integration and nonrandom mutation of a plasma membrane proton ATPase gene fragment within the Bs1 retroelement of maize. , 1994, The Plant cell.