Probabilistic reachability for stochastic hybrid systems: theory, computations, and applications

Stochastic Hybrid Systems are probabilistic models suitable at describing the dynamics of variables presenting interleaved and interacting continuous and discrete components. Engineering systems like communication networks or automotive and air traffic control systems, financial and industrial processes like market and manufacturing models, and natural systems like biological and ecological environments exhibit compound behaviors arising from the compositions and interactions between their heterogeneous components. Hybrid Systems are mathematical models that are by definition suitable to describe such complex systems. The effect of the uncertainty upon the involved discrete and continuous dynamics—both endogenously and exogenously to the system—is virtually unquestionable for biological systems and often inevitable for engineering systems, and naturally leads to the employment of stochastic hybrid models. The first part of this dissertation introduces gradually the modeling framework and focuses on some of its features. In particular, two sequential approximation procedures are introduced, which translate a general stochastic hybrid framework into a new probabilistic model. Their convergence properties are sketched. It is argued that the obtained model is more predisposed to analysis and computations. The kernel of the thesis concentrates on understanding the theoretical and computational issues associated with an original notion of probabilistic reachability for controlled stochastic hybrid systems. The formal approach is based on formulating reachability analysis as a stochastic optimal control problem, which is solved via dynamic programming. A number of related and significant control problems, such as that of probabilistic safety, are reinterpreted with this approach. The technique is also computationally tested on a benchmark case study throughout the whole work. Moreover, a methodological application of the concept in the area of Systems Biology is presented: a model for the production of antibiotic as a component of the stress response network for the bacterium Bacillus subtilis is described. The model allows one to reinterpret the survival analysis for the single bacterial cell as a probabilistic safety specification problem, which is then studied by the aforementioned technique. In conclusion, this dissertation aims at introducing a novel concept of probabilistic reachability that is both formally rigorous, computationally analyzable and of applicative interest. Furthermore, by the introduction of convergent approximation procedures, the thesis relates and positively compares the presented approach with other techniques in the literature.

[1]  Alexander B. Kurzhanski,et al.  REACHABILITY ANALYSIS UNDER CONTROL-DEPENDENT STOCHASTIC NOISE , 2005 .

[2]  R. Rosen Optimality Principles in Biology , 1967, Springer US.

[3]  Feng Lin,et al.  Analysis of Zeno behaviors in hybrid systems , 2002, Proceedings of the 41st IEEE Conference on Decision and Control, 2002..

[4]  HAROLD J. KUSHNER,et al.  Numerical Approximations for Stochastic Differential Games , 2002, SIAM J. Control. Optim..

[5]  J. Lygeros,et al.  General stochastic hybrid systems: modelling and optimal control , 2004, 2004 43rd IEEE Conference on Decision and Control (CDC) (IEEE Cat. No.04CH37601).

[6]  Karl Henrik Johansson,et al.  A hybrid systems framework for cellular processes. , 2005, Bio Systems.

[7]  D. Bertsekas Convergence of discretization procedures in dynamic programming , 1975 .

[8]  Paulo Tabuada,et al.  Compositional Abstractions of Hybrid Control Systems , 2004, Discret. Event Dyn. Syst..

[9]  C. Rao,et al.  Control, exploitation and tolerance of intracellular noise , 2002, Nature.

[10]  John Lygeros,et al.  Stochastic Hybrid Models: An Overview , 2003, ADHS.

[11]  K. Entian,et al.  Expression and Functional Analysis of the Subtilin Immunity Genes spaIFEG in the Subtilin-Sensitive Host Bacillus subtilis MO1099 , 2005, Journal of bacteriology.

[12]  K. Entian,et al.  The spa‐box for transcriptional activation of subtilin biosynthesis and immunity in Bacillus subtilis , 2003, Molecular microbiology.

[13]  Steven I. Marcus,et al.  Modeling and analysis of stochastic differential equations driven by point processes , 1978, IEEE Trans. Inf. Theory.

[14]  Michael S. Branicky,et al.  Studies in hybrid systems: modeling, analysis, and control , 1996 .

[15]  A. Arkin,et al.  Stochastic mechanisms in gene expression. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[16]  Ashish Tiwari,et al.  Symbolic Systems Biology: Hybrid Modeling and Analysis of Biological Networks , 2004, HSCC.

[17]  John Lygeros,et al.  Lecture Notes on Hybrid Systems , 2004 .

[18]  A. Shiryaev,et al.  Limit Theorems for Stochastic Processes , 1987 .

[19]  A. Arkin,et al.  Simulation of prokaryotic genetic circuits. , 1998, Annual review of biophysics and biomolecular structure.

[20]  S. Weiland,et al.  Optimal control of linear, stochastic systems with state and input constraints , 2002, Proceedings of the 41st IEEE Conference on Decision and Control, 2002..

[21]  G. Ladas,et al.  Oscillation Theory of Delay Differential Equations: With Applications , 1992 .

[22]  Antoine Girard,et al.  Reachability Analysis of Nonlinear Systems Using Conservative Approximation , 2003, HSCC.

[23]  G. TEMPLE,et al.  Stability and Control , 1953, Nature.

[24]  John Lygeros,et al.  Stochastic reachability for discrete time systems: an application to aircraft collision avoidance , 2003, 42nd IEEE International Conference on Decision and Control (IEEE Cat. No.03CH37475).

[25]  John N. Tsitsiklis,et al.  Neuro-Dynamic Programming , 1996, Encyclopedia of Machine Learning.

[26]  L. Shampine,et al.  Event location for ordinary differential equations , 2000 .

[27]  Steven I. Marcus,et al.  Stochastic differential games with multiple modes , 1998 .

[28]  M. Morari,et al.  Optimal control of piecewise affine systems: A dynamic programming approach , 2005 .

[29]  J. Tyson,et al.  Modeling the control of DNA replication in fission yeast. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[30]  N. H. Bingham Financial Modelling With Jump Processes , 2006 .

[31]  George J. Pappas,et al.  Stochastic safety verification using barrier certificates , 2004, 2004 43rd IEEE Conference on Decision and Control (CDC) (IEEE Cat. No.04CH37601).

[32]  Paul Glasserman,et al.  Numerical solution of jump-diffusion LIBOR market models , 2003, Finance Stochastics.

[33]  John N. Tsitsiklis,et al.  On the control of discrete-event dynamical systems , 1987, 26th IEEE Conference on Decision and Control.

[34]  S. Shankar Sastry,et al.  Aircraft conflict prediction in the presence of a spatially correlated wind field , 2005, IEEE Transactions on Intelligent Transportation Systems.

[35]  H. Witsenhausen A class of hybrid-state continuous-time dynamic systems , 1966 .

[36]  Dimitri P. Bertsekas,et al.  Stochastic optimal control : the discrete time case , 2007 .

[37]  A. Arkin,et al.  Motifs, modules and games in bacteria. , 2003, Current opinion in microbiology.

[38]  Datta N. Godbole,et al.  Addressing Multiobjective Control: Safety and Performance through Constrained Optimization , 2001, HSCC.

[39]  D. Bertsekas Infinite time reachability of state-space regions by using feedback control , 1972 .

[40]  Rufus Isaacs,et al.  Differential Games , 1965 .

[41]  M. Stone The Generalized Weierstrass Approximation Theorem , 1948 .

[42]  Karl Henrik Johansson,et al.  Dynamical properties of hybrid automata , 2003, IEEE Trans. Autom. Control..

[43]  A. Arkin,et al.  Diversity in times of adversity: probabilistic strategies in microbial survival games. , 2005, Journal of theoretical biology.

[44]  João Pedro Hespanha,et al.  Hybrid Modeling of TCP Congestion Control , 2001, HSCC.

[45]  D. Gillespie Exact Stochastic Simulation of Coupled Chemical Reactions , 1977 .

[46]  P.V. Zhivoglyadov,et al.  On stability in hybrid systems , 1998, Proceedings of the 37th IEEE Conference on Decision and Control (Cat. No.98CH36171).

[47]  T. Msadek When the going gets tough: survival strategies and environmental signaling networks in Bacillus subtilis. , 1999, Trends in microbiology.

[48]  Fernando Paganini,et al.  IEEE Transactions on Automatic Control , 2006 .

[49]  L. D. Nel Theorems of Stone-Weierstrass type for non-compact spaces , 1968 .

[50]  C. Rao,et al.  Control motifs for intracellular regulatory networks. , 2001, Annual review of biomedical engineering.

[51]  S. Ehrlich,et al.  Essential Bacillus subtilis genes , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[52]  Vijay Kumar,et al.  Accurate Event Detection for Simulating Hybrid Systems , 2001, HSCC.

[53]  John Lygeros,et al.  Stabilization of a class of stochastic differential equations with Markovian switching , 2005, Syst. Control. Lett..

[54]  P. Varaiya,et al.  Differential Games , 1994 .

[55]  Pravin Varaiya,et al.  On Reachability Under Uncertainty , 2002, SIAM J. Control. Optim..

[56]  V. N. Lagunov Introduction to differential games and control theory , 1985 .

[57]  M. K. Ghosh,et al.  Ergodic Control of Switching Diffusions , 1997 .

[58]  S. Ethier,et al.  Markov Processes: Characterization and Convergence , 2005 .

[59]  George J. Pappas,et al.  Geometric programming relaxations for linear system reachability , 2004, Proceedings of the 2004 American Control Conference.

[60]  W. M. Vos,et al.  Genetics of subtilin and nisin biosyntheses , 1996, Antonie van Leeuwenhoek.

[61]  João Pedro Hespanha,et al.  Stochastic Hybrid Systems: Application to Communication Networks , 2004, HSCC.

[62]  Maria Prandini,et al.  Stochastic Reachability: Theory and Numerical Approximation , 2006 .

[63]  John Lygeros,et al.  Toward a General Theory of Stochastic Hybrid Systems , 2006 .

[64]  Olaf Stursberg,et al.  Efficient Representation and Computation of Reachable Sets for Hybrid Systems , 2003, HSCC.

[65]  Nancy A. Lynch,et al.  Hybrid I/O Automata Revisited , 2001, HSCC.

[66]  Alexandre M. Bayen,et al.  Computational Techniques for the Verification and Control of Hybrid Systems , 2005 .

[67]  Ian M. Mitchell,et al.  A Toolbox of Hamilton-Jacobi Solvers for Analysis of Nondeterministic Continuous and Hybrid Systems , 2005, HSCC.

[68]  W. Grassman Approximation and Weak Convergence Methods for Random Processes with Applications to Stochastic Systems Theory (Harold J. Kushner) , 1986 .

[69]  S. Shankar Sastry,et al.  Sufficient Conditions for the Existence of Zeno Behavior , 2007, Proceedings of the 44th IEEE Conference on Decision and Control.

[70]  Marta Z. Kwiatkowska,et al.  Stochastic Model Checking , 2007, SFM.

[71]  K. Entian,et al.  Dual control of subtilin biosynthesis and immunity in Bacillus subtilis , 2002, Molecular microbiology.

[72]  Mato Baotic,et al.  A new algorithm for constrained finite time optimal control of hybrid systems with a linear performance index , 2003, 2003 European Control Conference (ECC).

[73]  A.D. Ames,et al.  A priori detection of Zeno behavior in communication networks modeled as hybrid systems , 2006, 2006 American Control Conference.

[74]  George J. Pappas,et al.  Discrete abstractions of hybrid systems , 2000, Proceedings of the IEEE.

[75]  Ling Shi,et al.  A Stability Criterion for Stochastic Hybrid Systems , 2005 .

[76]  S. Sastry Nonlinear Systems: Analysis, Stability, and Control , 1999 .

[77]  Mark H. A. Davis Piecewise‐Deterministic Markov Processes: A General Class of Non‐Diffusion Stochastic Models , 1984 .

[78]  John Lygeros,et al.  Hierarchical, Hybrid Control of Large Scale Systems , 1996 .

[79]  John Lygeros,et al.  Synthesizing Controllers for Nonlinear Hybrid Systems , 1998, HSCC.

[80]  John Lygeros,et al.  A Stochastic Hybrid Model for Air Traffic Control Simulation , 2004, HSCC.

[81]  Ádám M. Halász,et al.  Understanding the Bacterial Stringent Response Using Reachability Analysis of Hybrid Systems , 2004, HSCC.

[82]  Alexandre M. Bayen,et al.  A time-dependent Hamilton-Jacobi formulation of reachable sets for continuous dynamic games , 2005, IEEE Transactions on Automatic Control.

[84]  D. Bertsekas Control of uncertain systems with a set-membership description of the uncertainty , 1971 .

[85]  S. Shankar Sastry,et al.  Conflict resolution for air traffic management: a study in multiagent hybrid systems , 1998, IEEE Trans. Autom. Control..

[86]  Eckhard Platen,et al.  Time Discrete Taylor Approximations for Itǒ Processes with Jump Component , 1988 .

[87]  Nancy A. Lynch,et al.  Hybrid I/O automata , 1995, Inf. Comput..

[88]  M. Branicky Stability of switched and hybrid systems , 1994, Proceedings of 1994 33rd IEEE Conference on Decision and Control.

[89]  Leda Cosmides,et al.  The Latest on the Best Essays on Evolution and Optimality---- , 2005 .

[90]  Mads Kærn,et al.  Noise in eukaryotic gene expression , 2003, Nature.

[91]  João Pedro Hespanha Polynomial Stochastic Hybrid Systems , 2005, HSCC.

[92]  Rajeev Alur,et al.  A Theory of Timed Automata , 1994, Theor. Comput. Sci..

[93]  George J. Pappas,et al.  SIMULATION RELATIONS FOR DISCRETE-TIME LINEAR SYSTEMS , 2002 .

[94]  K. Gopalsamy Stability and Oscillations in Delay Differential Equations of Population Dynamics , 1992 .

[95]  JOHN EVANS,et al.  The Royal Society , 1894, Nature.

[96]  Pll Siinksen,et al.  Control , 1999, Diabetic medicine : a journal of the British Diabetic Association.

[97]  Antoine Girard,et al.  Reachability of Uncertain Linear Systems Using Zonotopes , 2005, HSCC.

[98]  Feng Lin,et al.  Analysis of Zeno behaviors in a class of hybrid systems , 2005, IEEE Transactions on Automatic Control.

[99]  Martin L. Puterman,et al.  Markov Decision Processes: Discrete Stochastic Dynamic Programming , 1994 .

[100]  Manuela L. Bujorianu,et al.  Extended Stochastic Hybrid Systems and Their Reachability Problem , 2004, HSCC.

[101]  John Lygeros,et al.  A probabilistic approach to aircraft conflict detection , 2000, IEEE Trans. Intell. Transp. Syst..

[102]  Dimitri Jeltsema,et al.  Proceedings Of The 2000 American Control Conference , 2000, Proceedings of the 2000 American Control Conference. ACC (IEEE Cat. No.00CH36334).

[103]  S. Bron,et al.  Engineering of quorum‐sensing systems for improved production of alkaline protease by Bacillus subtilis , 2004, Journal of applied microbiology.

[104]  Alexandre M. Bayen,et al.  A Differential Game Formulation of Alert Levels in ETMS Data for High Altitude Traffic , 2003 .

[105]  Jan C. Willems,et al.  Introduction to mathematical systems theory: a behavioral approach, Texts in Applied Mathematics 26 , 1999 .

[106]  Ashish Tiwari,et al.  Nonlinear Systems: Approximating Reach Sets , 2004, HSCC.

[107]  S. Shankar Sastry,et al.  The Concept of Deadlock and Livelock in Hybrid Control Systems , 2007, HSCC.

[108]  P. Souganidis,et al.  Differential Games and Representation Formulas for Solutions of Hamilton-Jacobi-Isaacs Equations. , 1983 .

[109]  Hidde de Jong,et al.  Modeling and Simulation of Genetic Regulatory Systems: A Literature Review , 2002, J. Comput. Biol..

[110]  Ian M. Mitchell,et al.  Level Set Methods for Computation in Hybrid Systems , 2000, HSCC.

[111]  J. Lygeros,et al.  A game theoretic approach to controller design for hybrid systems , 2000, Proceedings of the IEEE.

[112]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[113]  C. Guestrin,et al.  Solving Factored MDPs with Hybrid State and Action Variables , 2006, J. Artif. Intell. Res..

[114]  Karl Henrik Johansson,et al.  Towards a Geometric Theory of Hybrid Systems , 2000, HSCC.

[115]  K. Entian,et al.  Genes involved in self-protection against the lantibiotic subtilin produced by Bacillus subtilis ATCC 6633 , 1994, Applied and environmental microbiology.

[116]  L.C.G.J.M. Habets,et al.  Book review: Introduction to mathematical systems theory, a behavioral approach , 2000 .

[117]  Roger W. Brockett,et al.  Hybrid Models for Motion Control Systems , 1993 .

[118]  Olivier Bournez,et al.  Approximate Reachability Analysis of Piecewise-Linear Dynamical Systems , 2000, HSCC.

[119]  John Lygeros,et al.  On reachability and minimum cost optimal control , 2004, Autom..

[120]  Pravin Varaiya The martingale theory of jump processes , 1975 .

[121]  Tiziano Villa,et al.  Maximal Safe Set Computation for Idle Speed Control of an Automotive Engine , 2000, HSCC.

[122]  John Lygeros,et al.  Controllers for reachability specifications for hybrid systems , 1999, Autom..

[123]  Jianghai Hu,et al.  A stochastic approximation method for reachability computations , 2006 .

[124]  Bruce H. Krogh,et al.  Reachability Analysis of Large-Scale Affine Systems Using Low-Dimensional Polytopes , 2006, HSCC.

[125]  S. I. Rubinow,et al.  Introduction to Mathematical Biology , 1975 .

[126]  Alexandre M. Bayen,et al.  Validating a Hamilton-Jacobi Approximation to Hybrid System Reachable Sets , 2001, HSCC.

[127]  John Lygeros,et al.  An interface between continuous and discrete-event controllers for vehicle automation , 1994 .

[128]  U. Ozguner,et al.  Stability of hybrid systems , 1994, Proceedings of 1994 9th IEEE International Symposium on Intelligent Control.

[129]  S. Shankar Sastry,et al.  O-Minimal Hybrid Systems , 2000, Math. Control. Signals Syst..

[130]  B. Krogh,et al.  Computing polyhedral approximations to flow pipes for dynamic systems , 1998, Proceedings of the 37th IEEE Conference on Decision and Control (Cat. No.98CH36171).

[131]  S. Banerjee,et al.  Structure and expression of a gene encoding the precursor of subtilin, a small protein antibiotic. , 1988, The Journal of biological chemistry.

[132]  John Lygeros,et al.  Stochastic hybrid systems: Theory and safety critical applications , 2006 .

[133]  John Lygeros,et al.  Stochastic Hybrid Delay Population Dynamics , 2006, HSCC.

[134]  A. Bicchi,et al.  SYNTHESIS FOR PRACTICAL STABILIZATION OF QUANTIZED LINEAR SYSTEMS , 2022 .

[135]  John Lygeros,et al.  Towars a Theory of Stochastic Hybrid Systems , 2000, HSCC.

[136]  M. K. Ghosh,et al.  Optimal control of switching diffusions with application to flexible manufacturing systems , 1993 .

[137]  H. Kushner Numerical Methods for Stochastic Control Problems in Continuous Time , 2000 .

[138]  Mark H. Davis Markov Models and Optimization , 1995 .

[139]  David Q. Mayne,et al.  Reachability analysis of discrete-time systems with disturbances , 2006, IEEE Transactions on Automatic Control.

[140]  T. Stein Bacillus subtilis antibiotics: structures, syntheses and specific functions , 2005, Molecular microbiology.

[141]  A. B. Kurzhanskii,et al.  Attainability problems under stochastic perturbations , 2004 .

[142]  Xuerong Mao,et al.  Convergence of the Euler-Maruyama method for stochastic differential equations with Markovian switching , 2004, Math. Comput. Simul..

[143]  M. Mariton,et al.  Jump Linear Systems in Automatic Control , 1992 .

[144]  A.D. Ames,et al.  Characterization of Zeno behavior in hybrid systems using homological methods , 2005, Proceedings of the 2005, American Control Conference, 2005..

[145]  S. Shankar Sastry,et al.  Modeling Subtilin Production in Bacillus subtilis Using Stochastic Hybrid Systems , 2004, HSCC.

[146]  Henrik Sandberg,et al.  Proceedings of the 16th International symposium on Mathematical Theory of Networks and Systems , 2004 .

[147]  Patrizio Colaneri,et al.  On almost sure stability of continuous-time Markov jump linear systems , 2006, Autom..

[148]  V. Borkar Probability Theory: An Advanced Course , 1995 .

[149]  N. U. Prabhu,et al.  Stochastic Processes and Their Applications , 1999 .

[150]  Tae Woong Yoon,et al.  Proceedings of the 43rd IEEE Conference on Decision and Control , 2004 .

[151]  J. Walrand,et al.  Distributed Dynamic Programming , 2022 .

[152]  John Lygeros,et al.  On the exponential stability of switching diffusion processes , 2005, IEEE Transactions on Automatic Control.

[153]  R. Cont,et al.  Financial Modelling with Jump Processes , 2003 .

[154]  Xenofon D. Koutsoukos,et al.  Computational Methods for Reachability Analysis of Stochastic Hybrid Systems , 2006, HSCC.

[155]  S. Sastry,et al.  Towars a Theory of Stochastic Hybrid Systems , 2000, HSCC.

[156]  Aihua Xia,et al.  Weak Convergence of Markov Processes with Extended Generators , 1994 .

[157]  Abhay G. Bhatt,et al.  Weak convergence to a Markov process: The martingale approach , 1993 .

[158]  Christopher A. Voigt,et al.  The Bacillus subtilis sin Operon , 2005, Genetics.

[159]  Henk A. P. Blom,et al.  Stochastic Hybrid Processes with Hybrid Jumps , 2003, ADHS.

[160]  G. Church,et al.  Analysis of optimality in natural and perturbed metabolic networks , 2002 .

[161]  Paul Glasserman,et al.  Convergence of a discretization scheme for jump-diffusion processes with state–dependent intensities , 2004, Proceedings of the Royal Society of London. Series A: Mathematical, Physical and Engineering Sciences.

[162]  John Lygeros,et al.  Verified hybrid controllers for automated vehicles , 1998, IEEE Trans. Autom. Control..

[163]  R. Malhamé,et al.  Electric load model synthesis by diffusion approximation of a high-order hybrid-state stochastic system , 1985 .

[164]  Pravin Varaiya,et al.  Smart cars on smart roads: problems of control , 1991, IEEE Trans. Autom. Control..

[165]  Pravin Varaiya,et al.  Ellipsoidal Techniques for Reachability Analysis , 2000, HSCC.

[166]  J. Hasty,et al.  Noise-based switches and amplifiers for gene expression. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[167]  S. Shankar Sastry,et al.  A Homology Theory for Hybrid Systems: Hybrid Homology , 2005, HSCC.

[168]  S. Sastry,et al.  Zeno hybrid systems , 2001 .

[169]  H.A.P. Blom,et al.  Particle filtering for stochastic hybrid systems , 2004, 2004 43rd IEEE Conference on Decision and Control (CDC) (IEEE Cat. No.04CH37601).

[170]  Jörgen W. Weibull,et al.  Evolutionary Game Theory , 1996 .

[171]  K. Entian,et al.  Evidence for a multimeric subtilin synthetase complex , 1997, Journal of bacteriology.

[172]  Anders Rantzer,et al.  Convex dynamic programming for hybrid systems , 2002, IEEE Trans. Autom. Control..

[173]  D. Williams STOCHASTIC DIFFERENTIAL EQUATIONS: THEORY AND APPLICATIONS , 1976 .

[174]  S. Gould,et al.  The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme , 1979, Proceedings of the Royal Society of London. Series B. Biological Sciences.

[175]  Vivek S. Borkar,et al.  Optimal Control of Diffusion Processes , 1989 .

[176]  Antoine Girard,et al.  Approximate Simulation Relations for Hybrid Systems , 2008, Discret. Event Dyn. Syst..

[177]  John Lygeros,et al.  Reachability Questions in Piecewise Deterministic Markov Processes , 2003, HSCC.

[178]  Calin Belta,et al.  Hybrid Modeling and Simulation of Biomolecular Networks , 2001, HSCC.

[179]  Pravin Varaiya,et al.  Stochastic Systems: Estimation, Identification, and Adaptive Control , 1986 .

[180]  Hiroaki Kitano,et al.  Looking beyond the details: a rise in system-oriented approaches in genetics and molecular biology , 2002, Current Genetics.

[181]  D. Gillespie A General Method for Numerically Simulating the Stochastic Time Evolution of Coupled Chemical Reactions , 1976 .

[182]  Patrizio Colaneri,et al.  Almost sure stability of stochastic linear systems with ergodic parameters: an average contractivity criterion , 2006, Proceedings of the 45th IEEE Conference on Decision and Control.

[183]  M. K. Ghosh,et al.  Optimal Control of a Stochastic Hybrid System with Discounted Cost , 1999 .

[184]  Ashish Tiwari,et al.  Box invariance of Hybrid and switched Systems , 2006, ADHS.

[185]  Debasish Chatterjee,et al.  Stability analysis of deterministic and stochastic switched systems via a comparison principle and multiple Lyapunov functions , 2006, SIAM J. Control. Optim..

[186]  S. Shankar Sastry,et al.  Probabilistic safety analysis in three dimensional aircraft flight , 2003, 42nd IEEE International Conference on Decision and Control (IEEE Cat. No.03CH37475).

[187]  G. Milstein Numerical Integration of Stochastic Differential Equations , 1994 .

[188]  S. Strogatz Exploring complex networks , 2001, Nature.

[189]  E. M. Hartwell Boston , 1906 .

[190]  D. Chatterjee,et al.  On stability of stochastic switched systems , 2004, 2004 43rd IEEE Conference on Decision and Control (CDC) (IEEE Cat. No.04CH37601).

[191]  J M Smith,et al.  Evolution and the theory of games , 1976 .

[192]  J. Geromel,et al.  Stability and stabilization of discrete time switched systems , 2006 .

[193]  Ashish Tiwari,et al.  Series of Abstractions for Hybrid Automata , 2002, HSCC.

[194]  Arunabha Bagchi,et al.  Modeling Stochastic Hybrid Systems , 2003, System Modelling and Optimization.

[195]  Daniel Liberzon,et al.  Switching in Systems and Control , 2003, Systems & Control: Foundations & Applications.

[196]  Linda J. S. Allen,et al.  An introduction to mathematical biology , 2006 .

[197]  Ian M. Mitchell,et al.  A Toolbox of Level Set Methods , 2005 .

[198]  John Lygeros,et al.  Parameter identification for piecewise Deterministic Markov Processes: a Case Study on a biochemical Network , 2006, ADHS.

[199]  Pravin Varaiya,et al.  What's decidable about hybrid automata? , 1995, STOC '95.

[200]  John Lygeros,et al.  Asymptotic stability and boundedness of delay switching diffusions , 2004, IEEE Transactions on Automatic Control.

[201]  A. Arkin,et al.  It's a noisy business! Genetic regulation at the nanomolar scale. , 1999, Trends in genetics : TIG.

[202]  Ansgar Fehnker,et al.  Benchmarks for Hybrid Systems Verification , 2004, HSCC.

[203]  Thomas A. Henzinger,et al.  Hybrid Automata: An Algorithmic Approach to the Specification and Verification of Hybrid Systems , 1992, Hybrid Systems.