Complete genome sequence of ‘Halanaeroarchaeum sulfurireducens’ M27-SA2, a sulfur-reducing and acetate-oxidizing haloarchaeon from the deep-sea hypersaline anoxic lake Medee

[1]  M. Ferrer,et al.  Elemental sulfur and acetate can support life of a novel strictly anaerobic haloarchaeon , 2015, The ISME Journal.

[2]  A. Ventosa,et al.  Halobacteria class. nov. , 2015 .

[3]  G. Garrity,et al.  Euryarchaeota phy. nov. , 2015 .

[4]  A. Marchfelder,et al.  The Adaptive Immune System of Haloferax volcanii , 2015, Life.

[5]  Michail M. Yakimov,et al.  Genomic Analysis of Pure Cultures and Communities , 2015 .

[6]  M. Yakimov,et al.  Unveiling microbial activities along the halocline of Thetis, a deep-sea hypersaline anoxic basin , 2014, The ISME Journal.

[7]  J. Eyfjörd,et al.  Systematic Pathway Enrichment Analysis of a Genome-Wide Association Study on Breast Cancer Survival Reveals an Influence of Genes Involved in Cell Adhesion and Calcium Signaling on the Patients’ Clinical Outcome , 2014, PloS one.

[8]  H. Xiang,et al.  Haloarcula hispanica CRISPR authenticates PAM of a target sequence to prime discriminative adaptation , 2014, Nucleic acids research.

[9]  Susumu Goto,et al.  Data, information, knowledge and principle: back to metabolism in KEGG , 2013, Nucleic Acids Res..

[10]  M. Borghini,et al.  Microbial life in the Lake Medee, the largest deep-sea salt-saturated formation , 2013, Scientific Reports.

[11]  D. van Sinderen,et al.  Bacteriophage Orphan DNA Methyltransferases: Insights from Their Bacterial Origin, Function, and Occurrence , 2013, Applied and Environmental Microbiology.

[12]  D. Prangishvili The wonderful world of archaeal viruses. , 2013, Annual review of microbiology.

[13]  Andrew Camilli,et al.  A bacteriophage encodes its own CRISPR/Cas adaptive response to evade host innate immunity , 2013, Nature.

[14]  Shiraz A. Shah,et al.  Protospacer recognition motifs Mixed identities and functional diversity , 2013 .

[15]  J. Antón,et al.  Virioplankton Community Structure in Tunisian Solar Salterns , 2012, Applied and Environmental Microbiology.

[16]  Friedhelm Pfeiffer,et al.  An Archaeal Immune System Can Detect Multiple Protospacer Adjacent Motifs (PAMs) to Target Invader DNA* , 2012, The Journal of Biological Chemistry.

[17]  R. Oremland,et al.  Desulfohalophilus alkaliarsenatis gen. nov., sp. nov., an extremely halophilic sulfate- and arsenate-respiring bacterium from Searles Lake, California , 2012, Extremophiles.

[18]  A. Oren,et al.  Living with salt: metabolic and phylogenetic diversity of archaea inhabiting saline ecosystems. , 2012, FEMS microbiology letters.

[19]  Fernando Santos,et al.  Reconstructing Viral Genomes from the Environment Using Fosmid Clones: The Case of Haloviruses , 2012, PloS one.

[20]  Patrick Deschavanne,et al.  GOHTAM: a website for ‘Genomic Origin of Horizontal Transfers, Alignment and Metagenomics’ , 2012, Bioinform..

[21]  D. Bamford,et al.  Virion Architecture Unifies Globally Distributed Pleolipoviruses Infecting Halophilic Archaea , 2012, Journal of Virology.

[22]  J. Banfield,et al.  De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities , 2011, The ISME Journal.

[23]  G. Garrity Bergey’s Manual® of Systematic Bacteriology , 2012, Springer New York.

[24]  G. Muyzer,et al.  Sulfur-dependent respiration under extremely haloalkaline conditions in soda lake 'acetogens' and the description of Natroniella sulfidigena sp. nov. , 2011, FEMS microbiology letters.

[25]  Stan J. J. Brouns,et al.  Evolution and classification of the CRISPR–Cas systems , 2011, Nature Reviews Microbiology.

[26]  Stan J. J. Brouns,et al.  Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes , 2011, Biological chemistry.

[27]  M. Frith,et al.  Adaptive seeds tame genomic sequence comparison. , 2011, Genome research.

[28]  P. Forterre,et al.  Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria. , 2010, Journal of molecular biology.

[29]  D. Stahl,et al.  High Abundance of Ammonia-Oxidizing Archaea in Coastal Waters, Determined Using a Modified DNA Extraction Method , 2010, Applied and Environmental Microbiology.

[30]  O. Reva,et al.  SeqWord Gene Island Sniffer: A program to study the lateral genetic exchange among bacteria , 2009 .

[31]  R. Oremland,et al.  Ecophysiology of “Halarsenatibacter silvermanii” Strain SLAS-1T, gen. nov., sp. nov., a Facultative Chemoautotrophic Arsenate Respirer from Salt-Saturated Searles Lake, California , 2009, Applied and Environmental Microbiology.

[32]  Matthew Berriman,et al.  DNAPlotter: circular and linear interactive genome visualization , 2008, Bioinform..

[33]  R. M. Martínez-Espinosa,et al.  Nitrogen metabolism in haloarchaea , 2008, Saline systems.

[34]  J. Paul Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas? , 2008, The ISME Journal.

[35]  E. Birney,et al.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.

[36]  Chris F. Taylor,et al.  The minimum information about a genome sequence (MIGS) specification , 2008, Nature Biotechnology.

[37]  Rick L. Stevens,et al.  Functional metagenomic profiling of nine biomes , 2008, Nature.

[38]  Robert Huber,et al.  Halorhabdus tiamatea sp. nov., a non-pigmented, extremely halophilic archaeon from a deep-sea, hypersaline anoxic basin of the Red Sea, and emended description of the genus Halorhabdus. , 2008, International journal of systematic and evolutionary microbiology.

[39]  W. D. costa,et al.  Ecophysiology of tea , 2007 .

[40]  Ibtissem Grissa,et al.  CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats , 2007, Nucleic Acids Res..

[41]  Peter F. Hallin,et al.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes , 2007, Nucleic acids research.

[42]  Steven Salzberg,et al.  Identifying bacterial genes and endosymbiont DNA with Glimmer , 2007, Bioinform..

[43]  Robert C. Edgar,et al.  PILER-CR: Fast and accurate identification of CRISPR repeats , 2007, BMC Bioinformatics.

[44]  D. Fouts Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences , 2006, Nucleic acids research.

[45]  Naryttza N. Diaz,et al.  The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes , 2005, Nucleic acids research.

[46]  Matthew Berriman,et al.  ACT: the Artemis comparison tool , 2005, Bioinform..

[47]  T. Hansen Bergey's Manual of Systematic Bacteriology , 2005 .

[48]  H. G. Trüper The nomenclatural types of the orders Acholeplasmatales, Halanaerobiales, Halobacteriales, Methanobacteriales, Methanococcales, Methanomicrobiales, Planctomycetales, Prochlorales, Sulfolobales, Thermococcales, Thermoproteales and Verrucomicrobiales are the genera Acholeplasma, Halanaerobium, Halobac , 2005, International journal of systematic and evolutionary microbiology.

[49]  Michael P. Cummings,et al.  PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)] , 2004 .

[50]  F. Blattner,et al.  Mauve: multiple alignment of conserved genomic sequence with rearrangements. , 2004, Genome research.

[51]  J. Banfield,et al.  Community structure and metabolism through reconstruction of microbial genomes from the environment , 2004, Nature.

[52]  Validation list no. 84. Validation of publication of new names and new combinations previously effectively published outside the IJSEM. , 2002, International journal of systematic and evolutionary microbiology.

[53]  J. Euzéby Validation of publication of new names and new combinations previously effectively published outside the IJSEM. , 2005, International journal of systematic and evolutionary microbiology.

[54]  R. Huber,et al.  Phylum All. Euryarchaeota phy. nov. , 2001 .

[55]  Kim Rutherford,et al.  Artemis: sequence visualization and annotation , 2000, Bioinform..

[56]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[57]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[58]  S. Eddy,et al.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.

[59]  M. Aguirre,et al.  Validation of the publication of new names and new combinations previously effectively published outside the IJSB. , 1996, International journal of systematic bacteriology.

[60]  A. Oren ANAEROBIC GROWTH OF HALOPHILIC ARCHAEOBACTERIA BY REDUCTION OF FUMARATE , 1991 .

[61]  O. Kandler,et al.  Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[62]  A. Oren,et al.  Anaerobic growth of halophilic archaeobacteria by reduction of dimethysulfoxide and trimethylamine N-oxide , 1990 .

[63]  P. Sneath,et al.  Approved lists of bacterial names. , 1980, The Medical journal of Australia.

[64]  S. T. Cowan Bergey's Manual of Determinative Bacteriology , 1948, Nature.

[65]  M. Bravo Bergey's Manual of Determinative Bacteriology , 1926, The Indian Medical Gazette.